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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:38.6 nTPM
GTEx:42.2 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:16.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 38.6
Sample id Sample description nTPM
Putamen
nTPM: 38.6
2647 Male, age 75, left hemisphere 42.3
2482 Female, age 94, left hemisphere 41.1
1829 Male, age 74, unknown 39.3
1937 Female, age 91, right hemisphere 37.9
2466 Female, age 79, unknown 37.6
1838 Male, age 80, right hemisphere 36.7
2489 Female, age 72, unknown 35.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 42.2
Samples: 205

Max nTPM: 72.8
Min nTPM: 19.6
Std nTPM: 8.5
Median nTPM: 41.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 72.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 71.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 69.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 61.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 61.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 59.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 59.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 59.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 57.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 57.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 57.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 57.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 57.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 56.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 55.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 54.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 54.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 54.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 53.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 53.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 53.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 52.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 52.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 51.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 51.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 51.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 51.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 51.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 50.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 50.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 50.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 50.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 49.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 49.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 49.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 49.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 49.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 49.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 49.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 48.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 48.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 48.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 48.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 48.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 48.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 48.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 48.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 47.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 47.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 47.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 47.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 47.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 47.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 47.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 46.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 46.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 46.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 46.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 46.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 46.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 46.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 45.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 45.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 45.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 45.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 45.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 45.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 45.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 45.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 45.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 44.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 44.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 44.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 44.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 44.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 44.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 44.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 44.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 44.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 44.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 44.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 43.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 43.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 43.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 43.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 43.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 43.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 43.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 43.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 43.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 43.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 43.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 42.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 42.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 42.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 42.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 42.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 41.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 41.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 41.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 41.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 41.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 41.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 41.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 41.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 41.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 41.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 41.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 40.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 40.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 40.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 40.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 40.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 40.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 40.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 40.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 40.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 39.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 39.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 39.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 39.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 39.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 39.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 38.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 38.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 38.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 38.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 38.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 38.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 38.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 38.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 38.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 38.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 38.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 38.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 38.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 37.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 37.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 37.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 37.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 37.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 37.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 37.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 37.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 37.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 37.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 37.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 37.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 37.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 36.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 36.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 36.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 36.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 36.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 36.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 36.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 36.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 36.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 36.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 35.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 35.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 35.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 35.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 35.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 35.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 34.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 34.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 34.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 34.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 34.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 34.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 34.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 33.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 33.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 33.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 33.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 33.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 33.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 32.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 32.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 32.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 32.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 32.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 31.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 31.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 30.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 30.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 30.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 30.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 30.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 30.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 30.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 29.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 28.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 28.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 26.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 25.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 25.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 24.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 23.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 19.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 39.0
FF:10176-103C5 60 years, female 39.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.8
Pig sample Sample description nTPM
Putamen
nTPM: 16.8
Samples: 4

Max nTPM: 18.8
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 16.4
Sample C Male 18.8
Sample D Male 17.3

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