MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:47.2 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:13.3 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.5
2586 Male, age 75, left hemisphere 49.4
2411 Female, age 72, unknown 48.6
2828 Female, age 72, unknown 46.5
1870 Female, age 42, unknown 45.7
1830 Male, age 51, unknown 45.6
2019 Male, age 18, unknown 45.6
2219 Male, age 76, both hemispheres 44.6
1833 Male, age 53, unknown 44.5
1827 Male, age 72, unknown 42.9
2666 Male, age 74, left hemisphere 41.3
Dorsal raphe nucleus
nTPM: 43.3
2750 Male, age 76, both hemispheres 46.4
2298 Female, age 72, unknown 43.8
1828 Male, age 53, unknown 42.3
2016 Female, age 72, unknown 42.1
2047 Male, age 72, unknown 41.8
Inferior colliculus
nTPM: 41.0
1848 Female, age 42, unknown 41.8
2849 Male, age 72, unknown 41.6
1890 Male, age 53, unknown 40.4
2097 Female, age 72, unknown 40.4
Median raphe nucleus
nTPM: 45.6
2220 Male, age 76, midline 45.6
Pedunculopontine tegmental nucleus
nTPM: 43.9
2334 Male, age 80, both hemispheres 47.4
1921 Female, age 85, both hemispheres 42.3
2338 Male, age 61, both hemispheres 42.1
Periaquaductal grey, anterior
nTPM: 43.3
2502 Female, age 75, unknown 43.7
1795 Male, age 51, unknown 43.0
1947 Male, age 18, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 39.8
2464 Female, age 72, unknown 41.2
1831 Male, age 72, unknown 40.4
2850 Male, age 76, both hemispheres 38.9
1840 Male, age 53, unknown 38.7
Periaquaductal grey, lateral
nTPM: 41.4
2272 Male, age 74, both hemispheres 43.2
2140 Male, age 76, both hemispheres 40.5
2053 Male, age 18, unknown 40.3
Pretectal area
nTPM: 42.9
1815 Male, age 53, unknown 46.0
1817 Female, age 42, unknown 45.6
2007 Male, age 72, unknown 44.8
2667 Female, age 75, unknown 44.6
1816 Male, age 51, unknown 43.8
1944 Female, age 72, unknown 43.0
2825 Male, age 18, unknown 41.6
2224 Female, age 72, unknown 41.5
2407 Male, age 75, both hemispheres 41.1
2273 Male, age 74, both hemispheres 40.8
2316 Male, age 76, right hemisphere 38.9
Red nucleus
nTPM: 47.6
2769 Male, age 72, unknown 50.8
2785 Male, age 18, unknown 50.1
2227 Male, age 72, unknown 49.6
2823 Male, age 76, right hemisphere 48.3
1904 Male, age 53, unknown 48.2
2588 Male, age 74, left hemisphere 48.1
2584 Male, age 75, left hemisphere 47.4
1821 Female, age 72, unknown 47.2
1865 Male, age 51, unknown 47.2
2503 Female, age 72, unknown 46.4
1954 Female, age 42, unknown 45.4
2725 Female, age 75, unknown 42.9
Substantia nigra
nTPM: 43.3
2590 Female, age 75, unknown 45.7
1851 Male, age 51, unknown 45.5
2583 Male, age 75, right hemisphere 44.9
2665 Male, age 74, both hemispheres 44.7
2699 Male, age 18, unknown 44.7
1916 Female, age 42, unknown 44.5
1941 Male, age 53, unknown 43.7
1889 Female, age 72, unknown 42.4
2409 Female, age 72, unknown 39.8
2241 Male, age 72, unknown 37.3
Superior colliculus
nTPM: 43.8
1913 Female, age 42, unknown 48.7
1995 Male, age 72, unknown 47.4
1796 Male, age 53, unknown 45.1
2664 Male, age 75, both hemispheres 43.6
2668 Female, age 75, unknown 43.2
1839 Male, age 51, unknown 42.5
2087 Female, age 72, unknown 42.5
2261 Male, age 18, unknown 42.5
1895 Male, age 76, right hemisphere 41.5
2587 Male, age 74, left hemisphere 40.8
Ventral tegmental area
nTPM: 44.4
2410 Female, age 72, unknown 50.3
2223 Female, age 72, unknown 44.8
1915 Female, age 42, unknown 43.8
2021 Male, age 53, unknown 42.5
1942 Male, age 51, unknown 42.4
2218 Male, age 76, both hemispheres 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.2
Samples: 139

Max nTPM: 107.0
Min nTPM: 21.1
Std nTPM: 12.2
Median nTPM: 46.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 83.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 82.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 77.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 76.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 70.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 66.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 66.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 65.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 15.0
Sample A Female 20.8
Sample B Female 15.0
Sample C Male 19.2
Sample D Male 15.5
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.6
Min nTPM: 13.5
Sample B Female 15.6
Sample C Male 15.1
Sample D Male 13.5
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.5
Sample A Female 18.6
Sample B Female 15.5
Sample C Male 16.6
Sample D Male 16.6
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 20.3
Sample C Male 18.0
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.5
Sample A Male 13.7
Sample B Male 13.2
Sample C Female 12.5
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69201636 Antisense, RP_050324_03_A01, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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