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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:53.4 nTPM
FANTOM5:111.9 Scaled Tags Per Million
Pig:70.8 nTPM
Mouse:161.9 nTPM
Allen mouse:17.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Amygdala
nTPM: 41.0
2814 Male, age 76, right hemisphere 52.5
2695 Female, age 67, right hemisphere 39.6
1987 Female, age 91, left hemisphere 39.2
2517 Female, age 94, left hemisphere 37.9
2514 Male, age 75, right hemisphere 36.0
Basal amygdala
nTPM: 42.1
2685 Female, age 94, left hemisphere 47.1
2243 Female, age 91, right hemisphere 45.5
1955 Male, age 76, both hemispheres 43.9
2609 Male, age 75, right hemisphere 40.8
2110 Male, age 80, left hemisphere 39.3
2827 Female, age 67, right hemisphere 36.2
Central amygdala
nTPM: 43.0
1905 Male, age 76, both hemispheres 46.8
2701 Female, age 91, right hemisphere 44.7
2239 Male, age 80, left hemisphere 43.6
2826 Female, age 94, left hemisphere 41.1
2515 Male, age 75, right hemisphere 38.6
Corticomedial amygdala
nTPM: 43.1
2240 Male, age 76, both hemispheres 49.7
2242 Female, age 91, right hemisphere 45.9
2829 Male, age 80, left hemisphere 44.0
2429 Female, age 94, left hemisphere 42.5
2535 Female, age 67, right hemisphere 39.7
2428 Male, age 75, right hemisphere 37.1
Lateral amygdala
nTPM: 40.6
1883 Male, age 76, both hemispheres 46.0
2534 Female, age 94, left hemisphere 45.4
2255 Female, age 91, right hemisphere 40.8
2256 Male, age 80, left hemisphere 39.0
2516 Male, age 75, right hemisphere 37.8
2830 Female, age 67, right hemisphere 34.7
Stria terminalis, bed nucleus
nTPM: 46.6
2201 Male, age 74, unknown 50.9
2486 Female, age 94, both hemispheres 44.9
1974 Female, age 91, both hemispheres 44.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.4
Samples: 152

Max nTPM: 95.1
Min nTPM: 28.4
Std nTPM: 11.3
Median nTPM: 53.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 95.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 84.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 80.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 78.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 74.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 69.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 69.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 69.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 69.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 68.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 67.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 66.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 66.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 64.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 64.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 64.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 64.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 64.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 63.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 63.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 63.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 61.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 61.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 61.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 61.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 60.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 60.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 60.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 59.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 59.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 59.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 59.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 59.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 59.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 59.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 59.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 58.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 58.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 58.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 56.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 56.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 55.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 55.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 55.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 55.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 54.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 54.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 54.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 53.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 53.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 53.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 53.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 52.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 52.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 50.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 49.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 49.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 49.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 48.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 48.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 48.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 47.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 47.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 47.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 46.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 46.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 45.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 45.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 45.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 45.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 45.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 45.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 45.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 45.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 44.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 43.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 43.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 43.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 43.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 43.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 42.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 42.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 42.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 42.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 42.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 41.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 40.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 40.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 40.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 39.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 39.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 38.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 37.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 36.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 34.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 32.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 31.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 28.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.9
FF:10151-102I7 76 years, female 111.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.8
Pig sample Sample description nTPM
Amygdala
nTPM: 70.8
Samples: 4

Max nTPM: 102.7
Min nTPM: 51.9
Sample A Female 102.7
Sample B Female 51.9
Sample C Male 59.3
Sample D Male 69.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 161.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 161.9
Samples: 4

Max nTPM: 183.3
Min nTPM: 146.0
Sample A Male 183.3
Sample B Male 161.0
Sample C Female 146.0
Sample D Female 157.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.1
532575 Antisense, RP_040810_02_B09, Mouse strain C57BL/6J (56 days, male) 17.1

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