MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.5 nTPM
HPA:54.5 nTPM
GTEx:58.8 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Pig:102.1 nTPM
Mouse:233.8 nTPM
Allen mouse:17.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.5
2666 Male, age 74, left hemisphere 54.9
2219 Male, age 76, both hemispheres 50.4
1827 Male, age 72, unknown 48.6
2586 Male, age 75, left hemisphere 46.7
1833 Male, age 53, unknown 46.2
2828 Female, age 72, unknown 44.0
1870 Female, age 42, unknown 43.7
1830 Male, age 51, unknown 40.5
2411 Female, age 72, unknown 40.3
2019 Male, age 18, unknown 40.1
Dorsal raphe nucleus
nTPM: 42.6
1828 Male, age 53, unknown 50.2
2047 Male, age 72, unknown 43.8
2298 Female, age 72, unknown 43.7
2750 Male, age 76, both hemispheres 39.3
2016 Female, age 72, unknown 36.2
Inferior colliculus
nTPM: 44.2
2849 Male, age 72, unknown 53.8
1848 Female, age 42, unknown 41.5
2097 Female, age 72, unknown 41.3
1890 Male, age 53, unknown 40.2
Median raphe nucleus
nTPM: 54.5
2220 Male, age 76, midline 54.5
Pedunculopontine tegmental nucleus
nTPM: 48.1
2334 Male, age 80, both hemispheres 49.9
2338 Male, age 61, both hemispheres 48.4
1921 Female, age 85, both hemispheres 46.1
Periaquaductal grey, anterior
nTPM: 43.4
1947 Male, age 18, unknown 46.6
1795 Male, age 51, unknown 44.0
2502 Female, age 75, unknown 39.6
Periaquaductal grey, dorsal
nTPM: 44.9
2850 Male, age 76, both hemispheres 50.5
1831 Male, age 72, unknown 48.1
1840 Male, age 53, unknown 40.9
2464 Female, age 72, unknown 39.9
Periaquaductal grey, lateral
nTPM: 40.9
2272 Male, age 74, both hemispheres 41.8
2140 Male, age 76, both hemispheres 40.9
2053 Male, age 18, unknown 40.0
Pretectal area
nTPM: 46.5
1816 Male, age 51, unknown 54.9
1817 Female, age 42, unknown 53.1
1815 Male, age 53, unknown 51.5
1944 Female, age 72, unknown 50.8
2825 Male, age 18, unknown 48.3
2007 Male, age 72, unknown 48.1
2667 Female, age 75, unknown 45.5
2407 Male, age 75, both hemispheres 45.2
2224 Female, age 72, unknown 43.5
2273 Male, age 74, both hemispheres 36.7
2316 Male, age 76, right hemisphere 34.0
Red nucleus
nTPM: 42.2
2584 Male, age 75, left hemisphere 53.6
1821 Female, age 72, unknown 46.8
2725 Female, age 75, unknown 46.5
1954 Female, age 42, unknown 43.6
2823 Male, age 76, right hemisphere 42.9
2785 Male, age 18, unknown 41.6
2588 Male, age 74, left hemisphere 40.7
2769 Male, age 72, unknown 39.9
1865 Male, age 51, unknown 38.2
1904 Male, age 53, unknown 38.0
2227 Male, age 72, unknown 37.8
2503 Female, age 72, unknown 36.4
Substantia nigra
nTPM: 49.1
2665 Male, age 74, both hemispheres 62.1
1916 Female, age 42, unknown 53.4
1941 Male, age 53, unknown 52.8
2699 Male, age 18, unknown 52.3
1889 Female, age 72, unknown 49.3
1851 Male, age 51, unknown 48.4
2583 Male, age 75, right hemisphere 47.6
2241 Male, age 72, unknown 46.8
2590 Female, age 75, unknown 43.3
2409 Female, age 72, unknown 34.8
Superior colliculus
nTPM: 42.5
2087 Female, age 72, unknown 48.5
2668 Female, age 75, unknown 46.9
1839 Male, age 51, unknown 46.4
2664 Male, age 75, both hemispheres 46.4
1895 Male, age 76, right hemisphere 42.9
1796 Male, age 53, unknown 42.5
2587 Male, age 74, left hemisphere 40.4
2261 Male, age 18, unknown 40.3
1913 Female, age 42, unknown 37.3
1995 Male, age 72, unknown 33.7
Ventral tegmental area
nTPM: 44.3
2218 Male, age 76, both hemispheres 54.8
2410 Female, age 72, unknown 46.7
1915 Female, age 42, unknown 45.1
1942 Male, age 51, unknown 40.6
2223 Female, age 72, unknown 39.6
2021 Male, age 53, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 139

Max nTPM: 150.6
Min nTPM: 26.0
Std nTPM: 21.4
Median nTPM: 54.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 144.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 121.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 97.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 96.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 94.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 94.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 91.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 89.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 88.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.5
FF:10158-103A5 76 years, female 66.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.1
Pig sample Sample description nTPM
Midbrain
nTPM: 98.4
Samples: 4

Max nTPM: 132.7
Min nTPM: 79.2
Sample A Female 79.2
Sample B Female 80.1
Sample C Male 132.7
Sample D Male 101.6
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 98.1
Min nTPM: 68.9
Sample B Female 68.9
Sample C Male 98.1
Sample D Male 73.8
Substantia nigra
nTPM: 95.2
Samples: 4

Max nTPM: 128.3
Min nTPM: 61.2
Sample A Female 120.7
Sample B Female 70.5
Sample C Male 128.3
Sample D Male 61.2
Superior colliculi
nTPM: 102.1
Samples: 4

Max nTPM: 125.8
Min nTPM: 60.7
Sample A Female 112.6
Sample B Female 60.7
Sample C Male 125.8
Sample D Male 109.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 233.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 233.8
Samples: 4

Max nTPM: 248.1
Min nTPM: 212.9
Sample A Male 212.9
Sample B Male 240.6
Sample C Female 233.5
Sample D Female 248.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.4
532575 Antisense, RP_040810_02_B09, Mouse strain C57BL/6J (56 days, male) 17.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.