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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:86.0 nTPM
GTEx:97.7 nTPM
FANTOM5:98.1 Scaled Tags Per Million
Pig:32.5 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 86.0
Sample id Sample description nTPM
Substantia nigra
nTPM: 86.0
2409 Female, age 72, unknown 92.3
2699 Male, age 18, unknown 91.7
1851 Male, age 51, unknown 88.1
2241 Male, age 72, unknown 87.7
2665 Male, age 74, both hemispheres 87.2
1916 Female, age 42, unknown 85.5
2590 Female, age 75, unknown 83.2
1889 Female, age 72, unknown 82.7
1941 Male, age 53, unknown 81.9
2583 Male, age 75, right hemisphere 79.4

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.7
Samples: 139

Max nTPM: 186.5
Min nTPM: 65.9
Std nTPM: 22.7
Median nTPM: 93.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 186.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 167.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 155.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 151.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 147.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 147.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 141.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 139.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 135.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 134.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 132.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 132.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 128.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 127.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 127.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 126.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 125.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 124.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 123.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 123.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 123.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 122.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 122.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 120.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 120.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 119.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 116.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 116.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 115.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 112.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 111.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 111.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 110.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 109.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 108.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 108.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 106.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 106.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 105.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 104.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 104.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 103.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 103.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 102.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 100.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 99.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 98.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 97.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 97.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 97.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 97.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 96.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 96.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 96.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 96.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 96.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 96.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 95.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 95.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 95.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 95.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 94.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 94.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 93.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 93.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 93.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 93.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 93.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 92.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 92.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 92.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 92.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 91.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 91.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 90.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 90.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 89.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 87.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 87.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 87.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 87.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 86.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 86.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 84.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 84.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 84.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 83.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 83.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 82.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 82.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 81.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 81.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 81.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 81.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 81.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 80.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 80.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 79.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 79.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 79.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 78.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 78.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 77.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 76.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 76.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 76.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 75.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 75.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 75.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 74.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 74.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 74.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 74.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 74.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 74.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 74.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 73.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 73.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 72.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 72.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 72.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 70.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 67.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 67.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 66.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 66.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 65.9
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 98.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.1
FF:10158-103A5 76 years, female 98.1

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.5
Samples: 4

Max nTPM: 36.6
Min nTPM: 27.1
Sample A Female 36.6
Sample B Female 27.1
Sample C Male 34.1
Sample D Male 32.1

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The Human Protein Atlas project is funded
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