MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA:52.7 nTPM
GTEx:93.3 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:74.7 nTPM
Mouse:139.6 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.4
2586 Male, age 75, left hemisphere 99.1
2666 Male, age 74, left hemisphere 56.7
2828 Female, age 72, unknown 51.2
1827 Male, age 72, unknown 46.6
2219 Male, age 76, both hemispheres 45.9
2019 Male, age 18, unknown 43.6
1830 Male, age 51, unknown 41.2
1833 Male, age 53, unknown 41.2
1870 Female, age 42, unknown 40.8
2411 Female, age 72, unknown 37.2
Dorsal raphe nucleus
nTPM: 36.9
2750 Male, age 76, both hemispheres 47.3
2047 Male, age 72, unknown 46.9
1828 Male, age 53, unknown 35.4
2298 Female, age 72, unknown 29.7
2016 Female, age 72, unknown 25.5
Inferior colliculus
nTPM: 40.1
1848 Female, age 42, unknown 45.8
2849 Male, age 72, unknown 39.5
1890 Male, age 53, unknown 39.2
2097 Female, age 72, unknown 36.1
Median raphe nucleus
nTPM: 44.1
2220 Male, age 76, midline 44.1
Pedunculopontine tegmental nucleus
nTPM: 33.9
2334 Male, age 80, both hemispheres 42.3
1921 Female, age 85, both hemispheres 37.1
2338 Male, age 61, both hemispheres 22.2
Periaquaductal grey, anterior
nTPM: 46.0
1947 Male, age 18, unknown 50.0
1795 Male, age 51, unknown 46.6
2502 Female, age 75, unknown 41.3
Periaquaductal grey, dorsal
nTPM: 26.0
1840 Male, age 53, unknown 35.8
2464 Female, age 72, unknown 29.2
1831 Male, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 13.1
Periaquaductal grey, lateral
nTPM: 22.2
2053 Male, age 18, unknown 32.6
2272 Male, age 74, both hemispheres 20.9
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 42.1
2007 Male, age 72, unknown 62.1
1944 Female, age 72, unknown 57.9
1817 Female, age 42, unknown 57.4
1816 Male, age 51, unknown 55.6
1815 Male, age 53, unknown 51.0
2825 Male, age 18, unknown 39.3
2667 Female, age 75, unknown 38.9
2407 Male, age 75, both hemispheres 38.1
2224 Female, age 72, unknown 28.0
2316 Male, age 76, right hemisphere 18.9
2273 Male, age 74, both hemispheres 16.5
Red nucleus
nTPM: 46.7
2588 Male, age 74, left hemisphere 73.3
2584 Male, age 75, left hemisphere 60.1
2785 Male, age 18, unknown 47.6
2227 Male, age 72, unknown 44.6
2769 Male, age 72, unknown 44.6
1821 Female, age 72, unknown 43.7
1865 Male, age 51, unknown 43.4
1904 Male, age 53, unknown 43.2
2503 Female, age 72, unknown 42.7
1954 Female, age 42, unknown 42.0
2823 Male, age 76, right hemisphere 39.9
2725 Female, age 75, unknown 34.9
Substantia nigra
nTPM: 52.7
2665 Male, age 74, both hemispheres 72.2
1916 Female, age 42, unknown 64.6
2583 Male, age 75, right hemisphere 60.9
1889 Female, age 72, unknown 56.4
1941 Male, age 53, unknown 54.7
1851 Male, age 51, unknown 54.5
2590 Female, age 75, unknown 45.0
2241 Male, age 72, unknown 43.0
2699 Male, age 18, unknown 39.2
2409 Female, age 72, unknown 36.8
Superior colliculus
nTPM: 45.2
2668 Female, age 75, unknown 73.5
2664 Male, age 75, both hemispheres 58.1
2587 Male, age 74, left hemisphere 48.8
1796 Male, age 53, unknown 47.6
2087 Female, age 72, unknown 46.2
2261 Male, age 18, unknown 42.3
1839 Male, age 51, unknown 40.7
1895 Male, age 76, right hemisphere 36.4
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 28.3
Ventral tegmental area
nTPM: 46.7
2223 Female, age 72, unknown 61.6
2218 Male, age 76, both hemispheres 52.5
2410 Female, age 72, unknown 51.9
1915 Female, age 42, unknown 42.2
1942 Male, age 51, unknown 42.0
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.3
Samples: 139

Max nTPM: 181.4
Min nTPM: 38.8
Std nTPM: 30.4
Median nTPM: 88.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 181.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 174.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 158.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 156.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 156.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 155.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 152.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 152.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 148.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 146.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 145.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.7
Pig sample Sample description nTPM
Midbrain
nTPM: 74.7
Samples: 4

Max nTPM: 101.3
Min nTPM: 50.1
Sample A Female 80.8
Sample B Female 50.1
Sample C Male 101.3
Sample D Male 66.5
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 47.4
Min nTPM: 38.8
Sample B Female 47.4
Sample C Male 44.1
Sample D Male 38.8
Substantia nigra
nTPM: 54.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 35.6
Sample A Female 63.2
Sample B Female 35.6
Sample C Male 60.9
Sample D Male 58.4
Superior colliculi
nTPM: 69.1
Samples: 4

Max nTPM: 96.9
Min nTPM: 33.9
Sample A Female 66.0
Sample B Female 33.9
Sample C Male 96.9
Sample D Male 79.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.6
Samples: 4

Max nTPM: 145.1
Min nTPM: 133.0
Sample A Male 135.5
Sample B Male 133.0
Sample C Female 144.7
Sample D Female 145.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
74882698 Antisense, RP_060315_04_G04, Mouse strain C57BL/6J (56 days, male) 11.9
69817240 Antisense, RP_050510_02_H09, Mouse strain C57BL/6J (56 days, male) 10.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.