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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
139.897
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:63.1 nTPM
HPA:63.1 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:137.8 nTPM
Mouse:271.9 nTPM
Allen mouse:21.2 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA035876
Thalamus mean intensity 139.897
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 63.195
Parafascicular thalamic nucleus 83.548
Pregeniculate nucleus 93.068
Stria terminalis 118.454
Zona incerta 93.277
Anterodorsal thalamic nucleus 81.573
Reticular thalamic nucleus 31.250
Vental anterior thalamic nucleus -
Medial habenular nucleus 67.159
Laterodorsal thalamic area 73.488
Paraventricular thalamic nucleus 139.897
Central medial thalamic area 94.924
Ventral lateral thalamic area -
Ventral medial thalamic area 67.566
Lateral habenulal nucleus 77.720
Ventral posterior thalamus 58.808
Anterior pretactal nucleus 57.507
Retromammillary nucleus 94.387

THALAMUS - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 9.4
2032 Female, age 42, unknown 25.3
2497 Male, age 66, unknown 2.9
2396 Male, age 61, right hemisphere 0.0
Centromedial thalamic nucleus
nTPM: 34.0
2401 Male, age 76, right hemisphere 68.1
2279 Female, age 85, left hemisphere 0.0
Habenula
nTPM: 63.1
2203 Male, age 61, left hemisphere 115.8
1957 Male, age 80, both hemispheres 91.2
2276 Male, age 66, unknown 45.3
2252 Male, age 62, unknown 0.0
Lateral geniculate body
nTPM: 53.2
2106 Female, age 67, right hemisphere 186.2
2399 Male, age 61, left hemisphere 119.4
1953 Male, age 62, unknown 73.5
2035 Female, age 72, unknown 47.1
2575 Female, age 94, right hemisphere 0.0
2659 Male, age 66, unknown 0.0
2841 Male, age 80, both hemispheres 0.0
2857 Male, age 74, right hemisphere 0.0
Lateral thalamic nuclei
nTPM: 16.4
1903 Male, age 76, left hemisphere 53.6
2765 Female, age 67, both hemispheres 21.0
2661 Female, age 72, unknown 7.2
2573 Female, age 94, left hemisphere 0.0
2577 Male, age 74, both hemispheres 0.0
Medial dorsal thalamic nucleus
nTPM: 40.6
2498 Male, age 66, unknown 105.9
2283 Male, age 80, right hemisphere 89.3
1859 Male, age 76, both hemispheres 84.2
1971 Male, age 61, right hemisphere 66.0
2026 Male, age 62, unknown 54.9
1810 Male, age 48, unknown 41.0
2492 Male, age 75, right hemisphere 35.8
2402 Female, age 67, both hemispheres 17.0
1930 Female, age 42, unknown 15.7
2576 Male, age 74, both hemispheres 14.6
2660 Female, age 72, unknown 3.4
2039 Female, age 72, unknown 0.0
2572 Female, age 94, right hemisphere 0.0
Medial geniculate body
nTPM: 18.7
1811 Female, age 42, unknown 49.6
2207 Male, age 80, right hemisphere 49.0
2657 Male, age 74, right hemisphere 17.5
2650 Female, age 94, left hemisphere 11.2
2049 Male, age 76, both hemispheres 3.6
2217 Female, age 72, unknown 0.0
2571 Male, age 75, right hemisphere 0.0
Nucleus reuniens
nTPM: 15.5
2212 Female, age 67, left hemisphere 46.6
2205 Male, age 80, left hemisphere 0.0
2210 Female, age 85, left hemisphere 0.0
Nucleus rhomboideus
nTPM: 28.8
2206 Male, age 80, both hemispheres 86.5
2213 Female, age 67, left hemisphere 0.0
2280 Female, age 85, left hemisphere 0.0
Posterior thalamic nucleus
nTPM: 18.0
2266 Male, age 76, right hemisphere 57.0
2655 Male, age 74, right hemisphere 8.5
2495 Female, age 67, right hemisphere 6.7
2649 Female, age 94, both hemispheres 0.0
Pulvinar
nTPM: 49.8
2398 Male, age 61, left hemisphere 120.6
1932 Male, age 80, right hemisphere 64.1
1972 Male, age 62, unknown 62.0
2496 Female, age 67, right hemisphere 60.3
2582 Female, age 72, unknown 51.9
2214 Male, age 76, right hemisphere 50.1
2724 Male, age 74, right hemisphere 33.7
1929 Male, age 48, unknown 29.9
1899 Female, age 42, unknown 25.7
2499 Male, age 66, unknown 0.0
Subthalamic nucleus
nTPM: 7.5
2658 Male, age 74, both hemispheres 26.9
2282 Male, age 61, both hemispheres 18.5
2275 Male, age 66, unknown 13.7
2406 Female, age 72, unknown 1.2
2056 Female, age 72, unknown 0.0
2124 Male, age 62, unknown 0.0
2216 Male, age 48, unknown 0.0
2779 Female, age 42, unknown 0.0
Ventral posterolateral thalamic nucleus
nTPM: 39.6
2397 Male, age 61, right hemisphere 75.1
2740 Male, age 76, right hemisphere 73.1
2197 Male, age 80, both hemispheres 65.8
2578 Male, age 74, both hemispheres 18.4
2581 Female, age 72, unknown 5.0
2570 Male, age 75, right hemisphere 0.0
Ventral posteromedial thalamic nucleus
nTPM: 42.6
2202 Male, age 61, left hemisphere 119.4
2758 Male, age 80, both hemispheres 74.9
2653 Male, age 74, both hemispheres 9.9
2127 Male, age 76, right hemisphere 8.6
2281 Male, age 75, right hemisphere 0.0
Ventral thalamic nuclei
nTPM: 24.2
1860 Male, age 76, both hemispheres 66.3
1845 Male, age 48, unknown 45.3
2285 Male, age 62, unknown 34.3
2204 Male, age 80, both hemispheres 27.8
1912 Female, age 42, unknown 25.8
2858 Female, age 72, unknown 18.6
2291 Female, age 72, unknown 0.0
2580 Male, age 66, unknown 0.0
2652 Male, age 74, left hemisphere 0.0
Ventromedial nucleus
nTPM: 0.0
1822 Female, age 42, unknown 0.0
1982 Female, age 72, unknown 0.0
Zona incerta
nTPM: 6.6
2208 Male, age 80, right hemisphere 33.3
2215 Male, age 66, unknown 0.0
2403 Male, age 62, unknown 0.0
2663 Female, age 72, unknown 0.0
2822 Male, age 74, right hemisphere 0.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 26.9
FF:10154-103A1 76 years, female 26.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.8
Pig sample Sample description nTPM
Thalamus
nTPM: 137.8
Samples: 4

Max nTPM: 164.3
Min nTPM: 67.6
Sample A Female 163.4
Sample B Female 155.7
Sample C Male 164.3
Sample D Male 67.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 271.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 271.9
Samples: 4

Max nTPM: 302.0
Min nTPM: 243.0
Sample A Male 243.0
Sample B Male 302.0
Sample C Female 257.9
Sample D Female 284.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 21.2
100144408 Antisense, RP_110407_01_G07, Mouse strain C57BL/6J (56 days, male) 21.2

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