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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:129.7 nTPM
GTEx:168.9 nTPM
FANTOM5:232.7 Scaled Tags Per Million
Pig:47.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 129.7
Sample id Sample description nTPM
Putamen
nTPM: 129.7
2482 Female, age 94, left hemisphere 150.4
1838 Male, age 80, right hemisphere 142.2
1937 Female, age 91, right hemisphere 139.8
2466 Female, age 79, unknown 126.3
1829 Male, age 74, unknown 120.7
2647 Male, age 75, left hemisphere 114.7
2489 Female, age 72, unknown 113.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 168.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 168.9
Samples: 205

Max nTPM: 323.5
Min nTPM: 94.5
Std nTPM: 41.4
Median nTPM: 162.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 323.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 322.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 293.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 290.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 282.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 261.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 259.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 257.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 256.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 253.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 253.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 241.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 239.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 238.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 231.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 230.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 229.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 229.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 226.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 223.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 219.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 219.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 218.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 218.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 217.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 217.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 214.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 213.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 213.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 206.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 205.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 203.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 202.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 202.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 200.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 199.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 199.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 198.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 198.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 198.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 198.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 197.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 195.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 195.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 194.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 194.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 194.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 193.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 192.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 192.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 191.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 191.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 190.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 190.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 189.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 189.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 189.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 189.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 188.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 185.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 185.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 185.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 183.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 183.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 183.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 182.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 181.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 181.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 179.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 178.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 177.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 176.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 176.5
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 175.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 175.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 175.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 175.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 174.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 174.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 173.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 173.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 173.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 172.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 171.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 169.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 169.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 168.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 168.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 167.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 167.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 166.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 166.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 166.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 166.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 166.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 166.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 164.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 164.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 163.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 163.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 163.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 163.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 162.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 162.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 162.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 162.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 162.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 162.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 161.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 161.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 160.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 160.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 159.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 159.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 159.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 158.9
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 158.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 158.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 158.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 157.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 156.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 156.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 156.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 156.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 155.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 155.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 154.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 153.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 151.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 151.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 151.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 150.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 150.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 150.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 150.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 150.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 150.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 150.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 149.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 149.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 148.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 148.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 147.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 146.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 146.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 146.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 146.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 145.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 143.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 143.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 141.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 139.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 139.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 138.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 138.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 138.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 136.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 136.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 136.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 136.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 135.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 135.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 135.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 135.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 135.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 134.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 134.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 134.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 133.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 133.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 132.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 132.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 131.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 130.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 130.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 129.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 127.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 126.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 125.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 124.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 122.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 122.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 120.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 119.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 118.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 118.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 118.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 117.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 117.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 116.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 116.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 115.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 112.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 112.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 109.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 108.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 107.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 107.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 105.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 105.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 104.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 102.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 98.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 95.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 94.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 232.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 232.7
FF:10176-103C5 60 years, female 232.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.1
Pig sample Sample description nTPM
Putamen
nTPM: 47.1
Samples: 4

Max nTPM: 55.5
Min nTPM: 38.8
Sample A Female 55.5
Sample B Female 38.8
Sample C Male 52.5
Sample D Male 41.7

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