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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:0.4 nTPM
GTEx:24.6 nTPM
FANTOM5:153.4 Scaled Tags Per Million
Pig:58.9 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 0.4
Sample id Sample description nTPM
Substantia nigra
nTPM: 0.4
2665 Male, age 74, both hemispheres 4.3
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 139

Max nTPM: 50.5
Min nTPM: 12.7
Std nTPM: 6.1
Median nTPM: 23.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 37.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 37.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 36.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 35.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 34.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 33.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 32.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 31.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 31.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 30.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 30.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 30.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 30.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 29.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 29.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 29.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 29.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 28.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 28.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 28.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 27.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 27.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 27.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 26.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 26.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 25.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 25.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 25.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 25.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 25.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 25.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 25.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 25.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 25.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 24.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 24.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 24.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 24.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 24.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 24.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 24.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 24.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 24.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 24.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 24.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 24.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 24.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 24.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 24.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 24.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 23.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 23.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 23.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 23.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 23.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 23.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 23.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 23.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 23.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 23.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 23.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 23.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 23.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 23.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 23.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 22.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 22.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 22.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 22.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 22.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 22.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 22.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 22.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 22.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 22.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 22.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 22.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 21.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 21.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 21.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 21.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 21.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 21.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 21.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 21.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 21.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 20.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 20.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 20.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 20.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 20.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 19.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 19.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 18.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 18.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 18.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 18.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 17.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 17.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 17.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 16.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 15.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 15.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 14.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 14.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 12.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.7
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 153.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.4
FF:10158-103A5 76 years, female 153.4

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 72.4
Min nTPM: 49.2
Sample A Female 63.6
Sample B Female 50.5
Sample C Male 72.4
Sample D Male 49.2

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