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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:12.8 nTPM
GTEx:16.4 nTPM
FANTOM5:31.2 Scaled Tags Per Million
Pig:2.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 12.8
Sample id Sample description nTPM
Putamen
nTPM: 12.8
2489 Female, age 72, unknown 15.2
1829 Male, age 74, unknown 13.3
2647 Male, age 75, left hemisphere 13.2
2466 Female, age 79, unknown 12.6
2482 Female, age 94, left hemisphere 12.5
1937 Female, age 91, right hemisphere 11.7
1838 Male, age 80, right hemisphere 11.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 16.4
Samples: 205

Max nTPM: 157.8
Min nTPM: 2.3
Std nTPM: 17.5
Median nTPM: 11.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 157.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 120.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 95.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 66.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 64.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 56.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 45.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 45.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 43.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 42.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 38.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 38.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 37.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 37.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 36.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 36.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 36.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 33.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 33.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 32.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 31.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 30.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 29.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 29.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 27.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 27.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 27.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 27.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 26.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 25.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 25.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 24.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 24.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 24.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 23.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 23.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 23.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 23.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 23.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 22.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 22.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 22.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 21.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 21.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 21.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 21.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 21.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 21.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 21.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 20.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 20.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 20.5
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 20.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 20.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 20.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 19.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 19.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 19.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 19.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 19.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 19.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 19.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 19.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 18.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 18.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 18.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 18.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 17.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 17.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 17.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 17.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 17.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 17.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 16.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 16.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 16.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 15.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 15.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 15.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 14.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 14.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 14.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 14.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 14.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 13.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 13.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 13.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 13.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 12.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 12.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 12.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 12.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 12.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 12.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 12.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 12.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 12.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 12.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 11.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 11.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 11.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 11.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 11.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 11.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 11.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 10.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 10.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 10.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 10.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 10.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 10.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 10.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 10.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 10.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 10.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 9.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 9.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 9.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 9.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 9.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 9.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 9.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 9.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 9.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 9.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 8.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 8.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 8.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 8.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 8.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 8.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 8.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 7.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 7.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 7.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 7.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 7.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 7.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 7.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 7.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 7.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 7.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 6.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 6.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 6.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 6.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 6.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 6.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 6.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 6.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 6.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 6.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 6.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 6.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 6.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 6.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 6.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 6.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 6.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 6.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 6.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 6.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 6.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 5.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 5.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 5.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 5.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 5.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 5.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 5.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 5.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 5.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 5.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 5.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 4.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 4.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 4.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 4.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 4.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 4.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 4.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 4.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 4.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 4.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 4.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 3.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 3.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 3.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 3.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 3.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 3.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 3.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 3.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 2.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 2.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 31.2
FF:10176-103C5 60 years, female 31.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.1
Pig sample Sample description nTPM
Putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 2.2
Sample C Male 2.9
Sample D Male 2.4

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