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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:117.3 nTPM
HPA:117.3 nTPM
GTEx:101.1 nTPM
FANTOM5:89.8 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:241.7 nTPM
Allen mouse:6.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 117.3
Sample id Sample description nTPM
Amygdala
nTPM: 107.0
2814 Male, age 76, right hemisphere 115.3
2514 Male, age 75, right hemisphere 110.6
1987 Female, age 91, left hemisphere 108.0
2517 Female, age 94, left hemisphere 101.5
2695 Female, age 67, right hemisphere 99.7
Basal amygdala
nTPM: 100.5
2243 Female, age 91, right hemisphere 106.1
1955 Male, age 76, both hemispheres 103.5
2609 Male, age 75, right hemisphere 102.8
2110 Male, age 80, left hemisphere 102.0
2685 Female, age 94, left hemisphere 99.1
2827 Female, age 67, right hemisphere 89.6
Central amygdala
nTPM: 102.7
1905 Male, age 76, both hemispheres 111.6
2239 Male, age 80, left hemisphere 104.5
2515 Male, age 75, right hemisphere 101.2
2701 Female, age 91, right hemisphere 98.5
2826 Female, age 94, left hemisphere 97.6
Corticomedial amygdala
nTPM: 102.5
2829 Male, age 80, left hemisphere 107.9
2429 Female, age 94, left hemisphere 106.0
2428 Male, age 75, right hemisphere 104.2
2240 Male, age 76, both hemispheres 103.5
2242 Female, age 91, right hemisphere 102.2
2535 Female, age 67, right hemisphere 90.9
Lateral amygdala
nTPM: 99.5
1883 Male, age 76, both hemispheres 115.1
2516 Male, age 75, right hemisphere 104.5
2534 Female, age 94, left hemisphere 99.9
2255 Female, age 91, right hemisphere 95.9
2256 Male, age 80, left hemisphere 92.4
2830 Female, age 67, right hemisphere 89.2
Stria terminalis, bed nucleus
nTPM: 117.3
1974 Female, age 91, both hemispheres 129.9
2486 Female, age 94, both hemispheres 116.4
2201 Male, age 74, unknown 105.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 101.1
Samples: 152

Max nTPM: 195.9
Min nTPM: 48.5
Std nTPM: 29.5
Median nTPM: 96.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 195.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 191.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 178.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 176.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 160.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 147.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 142.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 142.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 139.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 139.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 136.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 134.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 134.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 134.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 134.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 133.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 132.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 132.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 131.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 130.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 127.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 126.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 125.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 123.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 121.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 121.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 120.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 120.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 119.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 117.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 117.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 115.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 113.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 112.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 111.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 111.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 110.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 109.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 109.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 108.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 107.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 106.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 106.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 106.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 106.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 105.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 103.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 102.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 98.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 98.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 96.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 95.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 94.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 93.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 92.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 92.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 91.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 91.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 90.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 86.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 86.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 86.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 86.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 86.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 85.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 83.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 83.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 83.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 82.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 82.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 81.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 81.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 80.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 78.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 78.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 78.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 78.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 78.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 77.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 73.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 73.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 72.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 72.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 72.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 71.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 70.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 69.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 69.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 68.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 65.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 64.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 63.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 63.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 62.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 59.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 53.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 51.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 48.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 89.8
FF:10151-102I7 76 years, female 89.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.7
Pig sample Sample description nTPM
Amygdala
nTPM: 47.7
Samples: 4

Max nTPM: 63.4
Min nTPM: 40.9
Sample A Female 63.4
Sample B Female 44.1
Sample C Male 42.2
Sample D Male 40.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 241.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 241.7
Samples: 4

Max nTPM: 260.5
Min nTPM: 220.7
Sample A Male 260.5
Sample B Male 240.2
Sample C Female 220.7
Sample D Female 245.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.9
1550 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 6.9
1549 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 6.5

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