MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:119.3 nTPM
HPA:119.3 nTPM
GTEx:124.9 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:90.8 nTPM
Mouse:325.3 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.9
2219 Male, age 76, both hemispheres 116.0
2411 Female, age 72, unknown 114.4
1827 Male, age 72, unknown 114.2
2019 Male, age 18, unknown 109.4
1870 Female, age 42, unknown 105.5
2828 Female, age 72, unknown 104.9
1833 Male, age 53, unknown 103.8
1830 Male, age 51, unknown 100.1
2666 Male, age 74, left hemisphere 97.9
2586 Male, age 75, left hemisphere 92.8
Dorsal raphe nucleus
nTPM: 113.1
2298 Female, age 72, unknown 127.6
2047 Male, age 72, unknown 112.5
2750 Male, age 76, both hemispheres 111.7
1828 Male, age 53, unknown 111.6
2016 Female, age 72, unknown 102.0
Inferior colliculus
nTPM: 106.4
2097 Female, age 72, unknown 112.5
1848 Female, age 42, unknown 107.2
1890 Male, age 53, unknown 105.7
2849 Male, age 72, unknown 100.3
Median raphe nucleus
nTPM: 115.6
2220 Male, age 76, midline 115.6
Pedunculopontine tegmental nucleus
nTPM: 113.1
1921 Female, age 85, both hemispheres 118.1
2334 Male, age 80, both hemispheres 115.8
2338 Male, age 61, both hemispheres 105.4
Periaquaductal grey, anterior
nTPM: 109.1
1947 Male, age 18, unknown 115.2
1795 Male, age 51, unknown 110.0
2502 Female, age 75, unknown 102.1
Periaquaductal grey, dorsal
nTPM: 103.7
1840 Male, age 53, unknown 108.7
2464 Female, age 72, unknown 103.5
2850 Male, age 76, both hemispheres 102.1
1831 Male, age 72, unknown 100.5
Periaquaductal grey, lateral
nTPM: 105.7
2272 Male, age 74, both hemispheres 117.7
2053 Male, age 18, unknown 100.0
2140 Male, age 76, both hemispheres 99.3
Pretectal area
nTPM: 112.2
1816 Male, age 51, unknown 120.8
1944 Female, age 72, unknown 120.0
2273 Male, age 74, both hemispheres 119.2
2007 Male, age 72, unknown 117.2
1817 Female, age 42, unknown 116.9
2224 Female, age 72, unknown 115.1
2667 Female, age 75, unknown 114.2
1815 Male, age 53, unknown 111.2
2825 Male, age 18, unknown 103.1
2316 Male, age 76, right hemisphere 100.9
2407 Male, age 75, both hemispheres 95.9
Red nucleus
nTPM: 101.8
1821 Female, age 72, unknown 111.2
2725 Female, age 75, unknown 110.6
2588 Male, age 74, left hemisphere 105.3
2785 Male, age 18, unknown 104.4
2503 Female, age 72, unknown 101.4
2823 Male, age 76, right hemisphere 101.0
1954 Female, age 42, unknown 100.4
1865 Male, age 51, unknown 98.7
2227 Male, age 72, unknown 98.6
2769 Male, age 72, unknown 98.1
1904 Male, age 53, unknown 96.5
2584 Male, age 75, left hemisphere 95.1
Substantia nigra
nTPM: 119.3
1916 Female, age 42, unknown 144.7
2241 Male, age 72, unknown 140.8
1851 Male, age 51, unknown 127.0
1941 Male, age 53, unknown 125.2
1889 Female, age 72, unknown 119.8
2409 Female, age 72, unknown 114.4
2699 Male, age 18, unknown 112.3
2590 Female, age 75, unknown 108.0
2665 Male, age 74, both hemispheres 104.1
2583 Male, age 75, right hemisphere 96.4
Superior colliculus
nTPM: 104.9
1895 Male, age 76, right hemisphere 114.9
2087 Female, age 72, unknown 112.1
1796 Male, age 53, unknown 110.3
2261 Male, age 18, unknown 107.9
2587 Male, age 74, left hemisphere 107.8
2668 Female, age 75, unknown 106.5
1839 Male, age 51, unknown 101.7
1913 Female, age 42, unknown 98.4
1995 Male, age 72, unknown 95.7
2664 Male, age 75, both hemispheres 93.7
Ventral tegmental area
nTPM: 114.6
2410 Female, age 72, unknown 124.5
1915 Female, age 42, unknown 123.7
2218 Male, age 76, both hemispheres 122.3
1942 Male, age 51, unknown 109.0
2021 Male, age 53, unknown 104.5
2223 Female, age 72, unknown 103.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.9
Samples: 139

Max nTPM: 356.9
Min nTPM: 62.7
Std nTPM: 59.7
Median nTPM: 105.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 356.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 348.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 332.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 332.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 273.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 264.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 246.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 236.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 216.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 212.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 211.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.8
Pig sample Sample description nTPM
Midbrain
nTPM: 86.5
Samples: 4

Max nTPM: 106.0
Min nTPM: 72.4
Sample A Female 106.0
Sample B Female 80.3
Sample C Male 87.2
Sample D Male 72.4
Periaqueductal gray
nTPM: 69.4
Samples: 3

Max nTPM: 79.4
Min nTPM: 62.3
Sample B Female 66.5
Sample C Male 79.4
Sample D Male 62.3
Substantia nigra
nTPM: 90.8
Samples: 4

Max nTPM: 130.3
Min nTPM: 60.3
Sample A Female 130.3
Sample B Female 72.9
Sample C Male 99.6
Sample D Male 60.3
Superior colliculi
nTPM: 88.7
Samples: 4

Max nTPM: 108.2
Min nTPM: 68.9
Sample A Female 98.9
Sample B Female 68.9
Sample C Male 108.2
Sample D Male 78.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 325.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.3
Samples: 4

Max nTPM: 332.6
Min nTPM: 317.5
Sample A Male 322.4
Sample B Male 328.7
Sample C Female 317.5
Sample D Female 332.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
1550 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 6.8
1549 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.