MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:510.1 nTPM
HPA:510.1 nTPM
GTEx:178.8 nTPM
FANTOM5:595.9 Scaled Tags Per Million
Pig:466.6 nTPM
Mouse:163.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 510.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 438.8
2828 Female, age 72, unknown 469.2
1827 Male, age 72, unknown 456.8
1870 Female, age 42, unknown 456.3
1833 Male, age 53, unknown 445.1
2219 Male, age 76, both hemispheres 441.1
2411 Female, age 72, unknown 435.8
2586 Male, age 75, left hemisphere 434.2
1830 Male, age 51, unknown 422.4
2019 Male, age 18, unknown 420.3
2666 Male, age 74, left hemisphere 407.0
Dorsal raphe nucleus
nTPM: 491.6
2298 Female, age 72, unknown 520.8
2016 Female, age 72, unknown 514.2
1828 Male, age 53, unknown 496.6
2047 Male, age 72, unknown 483.9
2750 Male, age 76, both hemispheres 442.3
Inferior colliculus
nTPM: 478.6
1848 Female, age 42, unknown 497.9
2849 Male, age 72, unknown 493.1
2097 Female, age 72, unknown 464.5
1890 Male, age 53, unknown 458.9
Median raphe nucleus
nTPM: 450.6
2220 Male, age 76, midline 450.6
Pedunculopontine tegmental nucleus
nTPM: 444.9
1921 Female, age 85, both hemispheres 466.2
2334 Male, age 80, both hemispheres 435.7
2338 Male, age 61, both hemispheres 432.9
Periaquaductal grey, anterior
nTPM: 472.7
1795 Male, age 51, unknown 489.3
2502 Female, age 75, unknown 465.1
1947 Male, age 18, unknown 463.8
Periaquaductal grey, dorsal
nTPM: 510.1
1840 Male, age 53, unknown 572.8
2850 Male, age 76, both hemispheres 529.1
2464 Female, age 72, unknown 481.9
1831 Male, age 72, unknown 456.5
Periaquaductal grey, lateral
nTPM: 496.9
2140 Male, age 76, both hemispheres 510.8
2053 Male, age 18, unknown 502.4
2272 Male, age 74, both hemispheres 477.4
Pretectal area
nTPM: 479.2
2273 Male, age 74, both hemispheres 543.7
1816 Male, age 51, unknown 512.6
1944 Female, age 72, unknown 503.4
2224 Female, age 72, unknown 494.4
2667 Female, age 75, unknown 492.7
1817 Female, age 42, unknown 474.1
2825 Male, age 18, unknown 466.8
2316 Male, age 76, right hemisphere 464.9
1815 Male, age 53, unknown 454.0
2407 Male, age 75, both hemispheres 435.1
2007 Male, age 72, unknown 429.1
Red nucleus
nTPM: 439.8
1954 Female, age 42, unknown 463.5
1821 Female, age 72, unknown 456.1
2503 Female, age 72, unknown 455.9
2725 Female, age 75, unknown 449.8
1904 Male, age 53, unknown 448.8
2823 Male, age 76, right hemisphere 448.4
2227 Male, age 72, unknown 447.2
2769 Male, age 72, unknown 447.1
1865 Male, age 51, unknown 431.5
2588 Male, age 74, left hemisphere 421.6
2785 Male, age 18, unknown 412.7
2584 Male, age 75, left hemisphere 394.7
Substantia nigra
nTPM: 476.7
2699 Male, age 18, unknown 547.0
1916 Female, age 42, unknown 518.1
2409 Female, age 72, unknown 488.6
2241 Male, age 72, unknown 487.4
1889 Female, age 72, unknown 479.3
1851 Male, age 51, unknown 468.7
2590 Female, age 75, unknown 467.0
2665 Male, age 74, both hemispheres 454.5
2583 Male, age 75, right hemisphere 428.4
1941 Male, age 53, unknown 427.7
Superior colliculus
nTPM: 465.3
2261 Male, age 18, unknown 489.2
2087 Female, age 72, unknown 488.6
1796 Male, age 53, unknown 482.9
1995 Male, age 72, unknown 481.4
1913 Female, age 42, unknown 462.3
2587 Male, age 74, left hemisphere 461.0
1839 Male, age 51, unknown 460.6
1895 Male, age 76, right hemisphere 445.4
2668 Female, age 75, unknown 443.9
2664 Male, age 75, both hemispheres 438.2
Ventral tegmental area
nTPM: 463.9
1915 Female, age 42, unknown 486.7
2410 Female, age 72, unknown 480.3
2021 Male, age 53, unknown 460.9
2218 Male, age 76, both hemispheres 458.7
1942 Male, age 51, unknown 453.1
2223 Female, age 72, unknown 443.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 178.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 178.8
Samples: 139

Max nTPM: 834.3
Min nTPM: 14.8
Std nTPM: 126.0
Median nTPM: 148.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 834.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 797.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 699.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 579.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 417.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 408.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 391.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 381.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 350.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 337.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 336.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 595.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 595.9
FF:10158-103A5 76 years, female 595.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 466.6
Pig sample Sample description nTPM
Midbrain
nTPM: 349.1
Samples: 4

Max nTPM: 477.5
Min nTPM: 280.3
Sample A Female 303.7
Sample B Female 477.5
Sample C Male 335.0
Sample D Male 280.3
Periaqueductal gray
nTPM: 466.6
Samples: 3

Max nTPM: 528.7
Min nTPM: 379.1
Sample B Female 492.0
Sample C Male 528.7
Sample D Male 379.1
Substantia nigra
nTPM: 347.4
Samples: 4

Max nTPM: 423.3
Min nTPM: 278.3
Sample A Female 397.6
Sample B Female 290.2
Sample C Male 423.3
Sample D Male 278.3
Superior colliculi
nTPM: 267.9
Samples: 4

Max nTPM: 322.8
Min nTPM: 150.3
Sample A Female 322.8
Sample B Female 150.3
Sample C Male 289.4
Sample D Male 309.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.3
Samples: 4

Max nTPM: 169.5
Min nTPM: 158.8
Sample A Male 169.5
Sample B Male 158.8
Sample C Female 159.8
Sample D Female 165.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77620233 Antisense, RP_070129_03_B08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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