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SLC1A3
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
167.063
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:532.8 nTPM
HPA:532.8 nTPM
FANTOM5:899.6 Scaled Tags Per Million
Pig:377.6 nTPM
Mouse:265.6 nTPM
Allen mouse:2.0 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA037467
Thalamus mean intensity 167.063
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 16.512
Parafascicular thalamic nucleus 18.156
Pregeniculate nucleus 16.784
Stria terminalis 115.277
Zona incerta 6.991
Anterodorsal thalamic nucleus 62.544
Reticular thalamic nucleus 15.159
Vental anterior thalamic nucleus 12.137
Medial habenular nucleus 25.608
Laterodorsal thalamic area 9.252
Paraventricular thalamic nucleus 141.723
Central medial thalamic area 26.662
Ventral lateral thalamic area -
Ventral medial thalamic area 6.473
Lateral habenulal nucleus 26.192
Ventral posterior thalamus 6.757
Anterior pretactal nucleus 11.395
Retromammillary nucleus 21.377

THALAMUS - HPA Brain RNA-seq
Max nTPM 532.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 443.4
2396 Male, age 61, right hemisphere 462.3
2497 Male, age 66, unknown 461.7
2032 Female, age 42, unknown 406.2
Centromedial thalamic nucleus
nTPM: 475.5
2279 Female, age 85, left hemisphere 519.4
2401 Male, age 76, right hemisphere 431.6
Habenula
nTPM: 532.8
1957 Male, age 80, both hemispheres 552.5
2276 Male, age 66, unknown 550.1
2203 Male, age 61, left hemisphere 520.3
2252 Male, age 62, unknown 508.2
Lateral geniculate body
nTPM: 454.6
2857 Male, age 74, right hemisphere 496.3
2399 Male, age 61, left hemisphere 476.6
2575 Female, age 94, right hemisphere 458.7
2106 Female, age 67, right hemisphere 448.0
2841 Male, age 80, both hemispheres 444.4
2035 Female, age 72, unknown 443.9
2659 Male, age 66, unknown 440.4
1953 Male, age 62, unknown 428.4
Lateral thalamic nuclei
nTPM: 459.5
2573 Female, age 94, left hemisphere 488.7
1903 Male, age 76, left hemisphere 471.1
2765 Female, age 67, both hemispheres 466.0
2661 Female, age 72, unknown 454.4
2577 Male, age 74, both hemispheres 417.3
Medial dorsal thalamic nucleus
nTPM: 505.4
2498 Male, age 66, unknown 560.4
1971 Male, age 61, right hemisphere 558.6
2026 Male, age 62, unknown 541.9
2402 Female, age 67, both hemispheres 541.3
1810 Male, age 48, unknown 537.6
2572 Female, age 94, right hemisphere 516.3
2039 Female, age 72, unknown 509.9
2283 Male, age 80, right hemisphere 488.1
2576 Male, age 74, both hemispheres 487.3
2492 Male, age 75, right hemisphere 484.1
1930 Female, age 42, unknown 460.0
1859 Male, age 76, both hemispheres 453.4
2660 Female, age 72, unknown 430.5
Medial geniculate body
nTPM: 466.8
2657 Male, age 74, right hemisphere 535.5
2650 Female, age 94, left hemisphere 491.4
2049 Male, age 76, both hemispheres 467.6
2207 Male, age 80, right hemisphere 450.9
2217 Female, age 72, unknown 450.9
2571 Male, age 75, right hemisphere 436.6
1811 Female, age 42, unknown 434.7
Nucleus reuniens
nTPM: 449.9
2212 Female, age 67, left hemisphere 470.7
2205 Male, age 80, left hemisphere 455.4
2210 Female, age 85, left hemisphere 423.6
Nucleus rhomboideus
nTPM: 467.3
2206 Male, age 80, both hemispheres 516.3
2213 Female, age 67, left hemisphere 458.3
2280 Female, age 85, left hemisphere 427.2
Posterior thalamic nucleus
nTPM: 492.0
2655 Male, age 74, right hemisphere 516.6
2495 Female, age 67, right hemisphere 510.5
2649 Female, age 94, both hemispheres 507.1
2266 Male, age 76, right hemisphere 433.9
Pulvinar
nTPM: 473.1
2724 Male, age 74, right hemisphere 543.3
2582 Female, age 72, unknown 502.0
2499 Male, age 66, unknown 492.4
2398 Male, age 61, left hemisphere 488.0
1932 Male, age 80, right hemisphere 473.9
2496 Female, age 67, right hemisphere 458.8
1929 Male, age 48, unknown 454.1
2214 Male, age 76, right hemisphere 446.6
1972 Male, age 62, unknown 443.0
1899 Female, age 42, unknown 429.3
Subthalamic nucleus
nTPM: 437.9
2406 Female, age 72, unknown 486.8
2282 Male, age 61, both hemispheres 469.3
2216 Male, age 48, unknown 441.8
2124 Male, age 62, unknown 430.4
2779 Female, age 42, unknown 428.6
2275 Male, age 66, unknown 425.5
2056 Female, age 72, unknown 414.0
2658 Male, age 74, both hemispheres 407.0
Ventral posterolateral thalamic nucleus
nTPM: 451.2
2197 Male, age 80, both hemispheres 521.6
2397 Male, age 61, right hemisphere 484.8
2570 Male, age 75, right hemisphere 441.3
2740 Male, age 76, right hemisphere 425.9
2578 Male, age 74, both hemispheres 416.9
2581 Female, age 72, unknown 416.5
Ventral posteromedial thalamic nucleus
nTPM: 458.1
2758 Male, age 80, both hemispheres 496.4
2202 Male, age 61, left hemisphere 488.4
2127 Male, age 76, right hemisphere 452.7
2281 Male, age 75, right hemisphere 444.8
2653 Male, age 74, both hemispheres 408.4
Ventral thalamic nuclei
nTPM: 449.4
2285 Male, age 62, unknown 483.0
2204 Male, age 80, both hemispheres 473.0
1912 Female, age 42, unknown 457.1
1860 Male, age 76, both hemispheres 454.2
2291 Female, age 72, unknown 449.4
2580 Male, age 66, unknown 447.6
1845 Male, age 48, unknown 431.3
2858 Female, age 72, unknown 425.5
2652 Male, age 74, left hemisphere 423.6
Ventromedial nucleus
nTPM: 504.6
1822 Female, age 42, unknown 516.4
1982 Female, age 72, unknown 492.8
Zona incerta
nTPM: 435.8
2208 Male, age 80, right hemisphere 514.1
2403 Male, age 62, unknown 434.3
2663 Female, age 72, unknown 416.1
2215 Male, age 66, unknown 410.1
2822 Male, age 74, right hemisphere 404.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 899.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 899.6
FF:10154-103A1 76 years, female 899.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 377.6
Pig sample Sample description nTPM
Thalamus
nTPM: 377.6
Samples: 4

Max nTPM: 459.8
Min nTPM: 273.5
Sample A Female 450.3
Sample B Female 326.8
Sample C Male 459.8
Sample D Male 273.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 265.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 265.6
Samples: 4

Max nTPM: 283.5
Min nTPM: 252.8
Sample A Male 252.8
Sample B Male 255.7
Sample C Female 283.5
Sample D Female 270.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.0
77620233 Antisense, RP_070129_03_B08, Mouse strain C57BL/6J (56 days, male) 2.0

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