MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:78.9 nTPM
HPA:78.9 nTPM
GTEx:53.6 nTPM
FANTOM5:175.6 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:25.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.2
1830 Male, age 51, unknown 77.6
1870 Female, age 42, unknown 74.4
1833 Male, age 53, unknown 72.6
2019 Male, age 18, unknown 71.1
2411 Female, age 72, unknown 67.0
2828 Female, age 72, unknown 62.9
2666 Male, age 74, left hemisphere 61.2
2586 Male, age 75, left hemisphere 60.1
2219 Male, age 76, both hemispheres 53.8
1827 Male, age 72, unknown 51.7
Dorsal raphe nucleus
nTPM: 52.2
2750 Male, age 76, both hemispheres 70.4
1828 Male, age 53, unknown 53.2
2016 Female, age 72, unknown 51.8
2047 Male, age 72, unknown 45.0
2298 Female, age 72, unknown 40.7
Inferior colliculus
nTPM: 49.5
1890 Male, age 53, unknown 52.3
2849 Male, age 72, unknown 51.1
1848 Female, age 42, unknown 50.2
2097 Female, age 72, unknown 44.4
Median raphe nucleus
nTPM: 53.8
2220 Male, age 76, midline 53.8
Pedunculopontine tegmental nucleus
nTPM: 60.8
2338 Male, age 61, both hemispheres 66.1
2334 Male, age 80, both hemispheres 60.7
1921 Female, age 85, both hemispheres 55.6
Periaquaductal grey, anterior
nTPM: 48.2
2502 Female, age 75, unknown 49.8
1947 Male, age 18, unknown 47.8
1795 Male, age 51, unknown 46.9
Periaquaductal grey, dorsal
nTPM: 46.6
2464 Female, age 72, unknown 54.3
2850 Male, age 76, both hemispheres 50.7
1831 Male, age 72, unknown 46.6
1840 Male, age 53, unknown 34.9
Periaquaductal grey, lateral
nTPM: 51.0
2272 Male, age 74, both hemispheres 54.3
2053 Male, age 18, unknown 49.5
2140 Male, age 76, both hemispheres 49.4
Pretectal area
nTPM: 51.0
2316 Male, age 76, right hemisphere 60.4
1815 Male, age 53, unknown 59.6
2407 Male, age 75, both hemispheres 58.7
2667 Female, age 75, unknown 52.8
2825 Male, age 18, unknown 52.7
1817 Female, age 42, unknown 52.6
2007 Male, age 72, unknown 49.2
2273 Male, age 74, both hemispheres 49.2
2224 Female, age 72, unknown 45.1
1944 Female, age 72, unknown 42.7
1816 Male, age 51, unknown 37.8
Red nucleus
nTPM: 78.9
1865 Male, age 51, unknown 93.1
1904 Male, age 53, unknown 91.8
2227 Male, age 72, unknown 89.6
2769 Male, age 72, unknown 87.4
2823 Male, age 76, right hemisphere 82.4
2785 Male, age 18, unknown 82.1
1954 Female, age 42, unknown 75.6
2588 Male, age 74, left hemisphere 75.4
2503 Female, age 72, unknown 72.6
1821 Female, age 72, unknown 72.2
2584 Male, age 75, left hemisphere 66.2
2725 Female, age 75, unknown 58.8
Substantia nigra
nTPM: 52.8
2583 Male, age 75, right hemisphere 61.3
2590 Female, age 75, unknown 60.0
2699 Male, age 18, unknown 59.4
1851 Male, age 51, unknown 56.8
2665 Male, age 74, both hemispheres 52.4
1889 Female, age 72, unknown 50.1
2409 Female, age 72, unknown 49.8
1941 Male, age 53, unknown 47.3
2241 Male, age 72, unknown 46.7
1916 Female, age 42, unknown 44.3
Superior colliculus
nTPM: 56.7
1913 Female, age 42, unknown 77.2
1995 Male, age 72, unknown 69.2
2668 Female, age 75, unknown 59.5
2587 Male, age 74, left hemisphere 57.7
1895 Male, age 76, right hemisphere 55.6
1839 Male, age 51, unknown 55.5
1796 Male, age 53, unknown 51.2
2664 Male, age 75, both hemispheres 50.6
2087 Female, age 72, unknown 48.1
2261 Male, age 18, unknown 42.8
Ventral tegmental area
nTPM: 59.5
2223 Female, age 72, unknown 76.4
2410 Female, age 72, unknown 61.2
2218 Male, age 76, both hemispheres 58.1
2021 Male, age 53, unknown 56.1
1942 Male, age 51, unknown 53.7
1915 Female, age 42, unknown 51.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 139

Max nTPM: 143.7
Min nTPM: 18.4
Std nTPM: 17.4
Median nTPM: 50.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 143.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 114.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 94.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 88.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 87.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 85.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 85.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 77.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.6
FF:10158-103A5 76 years, female 175.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 75.7
Min nTPM: 26.0
Sample A Female 75.7
Sample B Female 34.9
Sample C Male 26.7
Sample D Male 26.0
Periaqueductal gray
nTPM: 31.2
Samples: 3

Max nTPM: 33.8
Min nTPM: 29.5
Sample B Female 33.8
Sample C Male 29.5
Sample D Male 30.3
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 52.9
Min nTPM: 30.7
Sample A Female 39.2
Sample B Female 30.7
Sample C Male 37.3
Sample D Male 52.9
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 29.2
Sample A Female 35.8
Sample B Female 29.2
Sample C Male 33.0
Sample D Male 37.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.6
Sample A Male 23.8
Sample B Male 22.6
Sample C Female 28.6
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
386015 Antisense, RP_040804_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.