HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:57.5 nTPM
HPA:57.5 nTPM
GTEx:72.5 nTPM
FANTOM5:159.8 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:61.3 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005730Antibody HPA006642
Glial cells Not detectedHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Hippocampus
nTPM: 51.3
1911 Female, age 85, right hemisphere 63.5
2621 Female, age 67, right hemisphere 60.3
1855 Male, age 76, left hemisphere 50.9
2148 Female, age 91, left hemisphere 48.4
2529 Female, age 94, left hemisphere 47.7
1898 Male, age 80, left hemisphere 37.2
Dentate gyrus
nTPM: 41.2
2531 Female, age 67, both hemispheres 62.1
2530 Female, age 94, left hemisphere 44.8
2246 Female, age 85, both hemispheres 41.0
2010 Male, age 76, both hemispheres 35.5
1927 Female, age 91, both hemispheres 34.4
2528 Male, age 74, both hemispheres 29.5
Entorhinal gyrus
nTPM: 47.1
2686 Male, age 75, right hemisphere 64.1
2117 Female, age 91, right hemisphere 48.3
2613 Female, age 94, left hemisphere 46.4
1938 Female, age 85, left hemisphere 44.6
1787 Male, age 76, left hemisphere 40.6
2764 Male, age 80, right hemisphere 38.4
Hippocampus, CA1
nTPM: 47.5
2045 Male, age 76, both hemispheres 64.2
2749 Male, age 80, left hemisphere 50.0
2082 Female, age 91, right hemisphere 46.1
1873 Female, age 85, both hemispheres 39.9
2527 Male, age 74, both hemispheres 37.2
Hippocampus, CA2
nTPM: 41.6
2113 Female, age 91, right hemisphere 57.0
1940 Female, age 85, left hemisphere 54.2
2437 Female, age 94, left hemisphere 41.7
1892 Male, age 76, both hemispheres 38.8
1963 Male, age 80, left hemisphere 29.9
2249 Male, age 74, both hemispheres 27.7
Hippocampus, CA3
nTPM: 46.3
2137 Male, age 80, left hemisphere 68.6
2861 Female, age 67, both hemispheres 54.2
1891 Female, age 85, both hemispheres 50.1
1867 Male, age 76, both hemispheres 49.6
2620 Female, age 94, left hemisphere 35.4
2436 Male, age 74, both hemispheres 19.7
Parahippocampal cortex
nTPM: 48.0
2622 Female, age 67, right hemisphere 61.9
2245 Female, age 91, both hemispheres 61.3
2532 Female, age 72, left hemisphere 61.1
2018 Male, age 76, both hemispheres 54.3
2693 Female, age 94, both hemispheres 47.2
2692 Male, age 74, both hemispheres 42.1
1933 Female, age 85, both hemispheres 39.7
2250 Female, age 67, right hemisphere 39.1
1990 Female, age 91, right hemisphere 38.0
1850 Male, age 80, both hemispheres 35.2
Perirhinal gyrus
nTPM: 47.9
1841 Female, age 85, right hemisphere 57.4
2521 Female, age 94, right hemisphere 51.7
2848 Male, age 76, right hemisphere 48.9
1794 Male, age 80, right hemisphere 45.8
1847 Female, age 91, left hemisphere 35.5
Subiculum
nTPM: 57.5
2438 Female, age 94, left hemisphere 72.7
2042 Male, age 76, both hemispheres 68.4
1901 Male, age 80, both hemispheres 58.5
2729 Female, age 91, right hemisphere 52.7
1977 Female, age 85, both hemispheres 47.6
2619 Male, age 74, both hemispheres 45.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 72.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.5
Samples: 197

Max nTPM: 196.5
Min nTPM: 25.7
Std nTPM: 28.4
Median nTPM: 66.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 196.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 194.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 185.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 169.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 159.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 137.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 137.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 136.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 125.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 119.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 117.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 159.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 159.8
FF:10153-102I9 76 years, female 178.5
FF:10169-103B7 60 years, female 141.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 64.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 62.7
Samples: 4

Max nTPM: 78.9
Min nTPM: 42.5
Sample A Female 78.9
Sample B Female 52.6
Sample C Male 76.8
Sample D Male 42.5
Entorhinal cortex
nTPM: 56.1
Samples: 4

Max nTPM: 65.0
Min nTPM: 49.1
Sample A Female 54.0
Sample B Female 65.0
Sample C Male 56.4
Sample D Male 49.1
Subiculum
nTPM: 64.1
Samples: 4

Max nTPM: 70.7
Min nTPM: 56.7
Sample A Female 70.7
Sample B Female 70.5
Sample C Male 58.3
Sample D Male 56.7
Ventral hippocampus
nTPM: 61.5
Samples: 4

Max nTPM: 63.8
Min nTPM: 59.3
Sample A Female 62.1
Sample B Female 60.6
Sample C Male 63.8
Sample D Male 59.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 61.3
Samples: 4

Max nTPM: 65.1
Min nTPM: 56.7
Sample A Male 65.1
Sample B Male 64.6
Sample C Female 58.9
Sample D Female 56.7
Hippocampal formation
nTPM: 46.9
Samples: 4

Max nTPM: 51.8
Min nTPM: 39.6
Sample A Male 51.8
Sample B Male 39.6
Sample C Female 46.6
Sample D Female 49.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69013579 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 1.3
70431433 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 0.8
70608511 Antisense, RP_050630_01_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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