We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
EPB41L2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • EPB41L2
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:368.5 nTPM
GTEx:368.5 nTPM
FANTOM5:273.2 Scaled Tags Per Million
Pig:182.7 nTPM
Mouse:525.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 368.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 368.5
Samples: 105

Max nTPM: 514.7
Min nTPM: 208.0
Std nTPM: 70.8
Median nTPM:
466_1 57 years, female 514.7
217_1 76 years, male 501.7
415_1 77 years, female 493.6
149_1 88 years, male 486.2
490_1 67 years, female 485.9
405_1 91 years, male 483.4
316_1 62 years, male 481.5
229_1 69 years, female 481.2
81_1 67 years, male 474.2
43_1 64 years, female 473.2
286_1 68 years, female 467.0
153_1 70 years, female 464.5
414_1 84 years, female 459.0
142_1 61 years, female 455.5
32_1 67 years, male 451.0
413_1 59 years, female 449.7
526_1 61 years, male 449.2
425_1 59 years, female 448.8
126_1 63 years, male 448.5
172_1 72 years, female 437.0
518_1 75 years, female 435.0
352_1 62 years, male 434.9
324_1 76 years, male 428.0
348_1 84 years, male 427.4
468_1 89 years, male 424.3
499_1 55 years, female 419.7
35_1 74 years, female 418.4
480_1 63 years, male 416.4
495_1 57 years, female 413.1
162_1 79 years, female 412.0
163_1 78 years, male 409.3
246_1 77 years, male 405.6
406_1 79 years, male 404.1
404_1 82 years, female 402.4
503_1 68 years, male 402.2
137_1 83 years, male 400.6
6_1 73 years, female 399.0
389_1 86 years, female 396.8
318_1 68 years, male 392.6
189_1 76 years, male 392.4
9_1 66 years, female 391.5
237_1 82 years, male 389.6
386_1 76 years, male 389.1
375_1 74 years, female 388.7
139_1 64 years, female 388.5
177_1 74 years, male 387.7
396_1 62 years, male 385.7
311_1 78 years, male 376.5
447_1 81 years, male 376.3
18_1 88 years, male 370.5
266_1 85 years, male 369.4
117_1 61 years, male 368.9
251_1 78 years, male 367.9
115_1 83 years, male 367.1
322_1 76 years, male 364.0
292_1 71 years, male 360.7
335_1 73 years, female 359.2
517_1 88 years, male 355.2
321_1 62 years, female 355.0
376_1 75 years, female 353.5
394_1 75 years, female 352.7
288_1 66 years, female 349.0
265_1 87 years, male 348.5
320_1 89 years, female 347.9
313_1 79 years, female 347.1
347_1 72 years, male 344.5
145_1 84 years, male 344.3
264_1 73 years, female 343.6
354_1 81 years, female 343.5
291_1 76 years, male 338.2
379_1 60 years, male 337.8
355_1 70 years, female 335.0
319_1 81 years, male 334.1
349_1 83 years, male 330.6
501_1 88 years, male 330.2
491_1 89 years, female 329.8
17_1 71 years, male 329.0
254_1 77 years, female 315.8
350_1 84 years, female 315.8
314_1 67 years, male 315.4
384_1 83 years, male 315.4
243_1 75 years, male 313.0
315_1 62 years, female 310.0
173_1 67 years, male 305.6
377_1 82 years, female 303.9
353_1 82 years, female 303.5
120_1 70 years, female 299.4
109_1 81 years, female 297.4
218_1 71 years, female 296.0
89_1 63 years, male 295.4
293_1 68 years, female 284.9
307_1 66 years, female 280.5
295_1 61 years, female 273.2
2_1 77 years, female 269.5
452_1 88 years, female 268.5
351_1 91 years, male 263.9
119_1 70 years, female 259.0
42_1 85 years, male 256.6
356_1 87 years, female 255.8
99_1 64 years, male 248.9
506_1 65 years, male 246.2
317_1 60 years, male 235.5
308_1 70 years, female 233.8
4_1 88 years, female 227.6
41_1 94 years, female 208.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 273.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 273.2
FF:10030-101E3 24-65 years, mixed 273.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 182.7
Pig sample Sample description nTPM
Retina
nTPM: 182.8
Samples: 4

Max nTPM: 207.6
Min nTPM: 158.3
Sample A Female 177.8
Sample B Female 158.3
Sample C Male 207.6
Sample D Male 187.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 525.1
Mouse sample Sample description nTPM
Retina
nTPM: 525.2
Samples: 4

Max nTPM: 620.5
Min nTPM: 440.5
Sample A Male 545.6
Sample B Male 494.0
Sample C Female 440.5
Sample D Female 620.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.