MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:670.8 nTPM
HPA:670.8 nTPM
GTEx:719.5 nTPM
FANTOM5:1561.9 Scaled Tags Per Million
Pig:113.6 nTPM
Mouse:115.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 670.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 564.8
2411 Female, age 72, unknown 694.1
1830 Male, age 51, unknown 674.0
1870 Female, age 42, unknown 656.4
1833 Male, age 53, unknown 622.1
2019 Male, age 18, unknown 593.6
2828 Female, age 72, unknown 538.9
1827 Male, age 72, unknown 487.3
2666 Male, age 74, left hemisphere 486.7
2219 Male, age 76, both hemispheres 454.0
2586 Male, age 75, left hemisphere 441.4
Dorsal raphe nucleus
nTPM: 500.9
2750 Male, age 76, both hemispheres 711.3
2016 Female, age 72, unknown 492.4
1828 Male, age 53, unknown 473.5
2298 Female, age 72, unknown 419.6
2047 Male, age 72, unknown 407.6
Inferior colliculus
nTPM: 460.7
1848 Female, age 42, unknown 479.4
1890 Male, age 53, unknown 461.2
2849 Male, age 72, unknown 452.9
2097 Female, age 72, unknown 449.2
Median raphe nucleus
nTPM: 477.7
2220 Male, age 76, midline 477.7
Pedunculopontine tegmental nucleus
nTPM: 543.8
2334 Male, age 80, both hemispheres 581.5
2338 Male, age 61, both hemispheres 536.9
1921 Female, age 85, both hemispheres 512.9
Periaquaductal grey, anterior
nTPM: 446.1
1947 Male, age 18, unknown 473.5
2502 Female, age 75, unknown 468.1
1795 Male, age 51, unknown 396.6
Periaquaductal grey, dorsal
nTPM: 419.0
2464 Female, age 72, unknown 488.5
1831 Male, age 72, unknown 435.8
1840 Male, age 53, unknown 378.4
2850 Male, age 76, both hemispheres 373.5
Periaquaductal grey, lateral
nTPM: 423.4
2053 Male, age 18, unknown 450.8
2272 Male, age 74, both hemispheres 449.3
2140 Male, age 76, both hemispheres 370.0
Pretectal area
nTPM: 456.7
2316 Male, age 76, right hemisphere 545.1
1815 Male, age 53, unknown 529.5
2825 Male, age 18, unknown 477.8
1817 Female, age 42, unknown 475.1
2407 Male, age 75, both hemispheres 463.4
2273 Male, age 74, both hemispheres 459.1
2007 Male, age 72, unknown 458.4
2224 Female, age 72, unknown 435.7
2667 Female, age 75, unknown 413.9
1944 Female, age 72, unknown 388.2
1816 Male, age 51, unknown 377.2
Red nucleus
nTPM: 670.8
1865 Male, age 51, unknown 806.7
1821 Female, age 72, unknown 805.2
1904 Male, age 53, unknown 756.1
2823 Male, age 76, right hemisphere 709.4
1954 Female, age 42, unknown 679.9
2769 Male, age 72, unknown 679.6
2227 Male, age 72, unknown 674.7
2503 Female, age 72, unknown 667.3
2785 Male, age 18, unknown 616.9
2588 Male, age 74, left hemisphere 579.7
2725 Female, age 75, unknown 576.7
2584 Male, age 75, left hemisphere 497.9
Substantia nigra
nTPM: 497.7
1851 Male, age 51, unknown 568.3
2409 Female, age 72, unknown 543.2
2590 Female, age 75, unknown 540.4
1889 Female, age 72, unknown 526.9
2241 Male, age 72, unknown 500.3
2699 Male, age 18, unknown 494.9
2583 Male, age 75, right hemisphere 485.8
1916 Female, age 42, unknown 448.7
1941 Male, age 53, unknown 441.1
2665 Male, age 74, both hemispheres 427.0
Superior colliculus
nTPM: 516.4
1913 Female, age 42, unknown 657.4
1995 Male, age 72, unknown 607.7
1895 Male, age 76, right hemisphere 606.6
2587 Male, age 74, left hemisphere 561.1
2668 Female, age 75, unknown 528.5
1839 Male, age 51, unknown 521.4
1796 Male, age 53, unknown 457.6
2087 Female, age 72, unknown 412.9
2664 Male, age 75, both hemispheres 410.1
2261 Male, age 18, unknown 400.9
Ventral tegmental area
nTPM: 540.3
2223 Female, age 72, unknown 654.9
2410 Female, age 72, unknown 618.6
2021 Male, age 53, unknown 519.9
1915 Female, age 42, unknown 494.7
1942 Male, age 51, unknown 482.6
2218 Male, age 76, both hemispheres 470.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 719.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 719.5
Samples: 139

Max nTPM: 2326.5
Min nTPM: 246.7
Std nTPM: 390.8
Median nTPM: 598.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2326.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1915.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1878.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1767.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1672.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1654.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1594.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1478.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1421.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1399.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1364.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1561.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1561.9
FF:10158-103A5 76 years, female 1561.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.6
Pig sample Sample description nTPM
Midbrain
nTPM: 113.6
Samples: 4

Max nTPM: 188.2
Min nTPM: 64.1
Sample A Female 188.2
Sample B Female 121.0
Sample C Male 64.1
Sample D Male 81.0
Periaqueductal gray
nTPM: 83.6
Samples: 3

Max nTPM: 97.4
Min nTPM: 66.1
Sample B Female 97.4
Sample C Male 66.1
Sample D Male 87.2
Substantia nigra
nTPM: 110.4
Samples: 4

Max nTPM: 134.1
Min nTPM: 85.0
Sample A Female 134.1
Sample B Female 90.9
Sample C Male 85.0
Sample D Male 131.6
Superior colliculi
nTPM: 101.2
Samples: 4

Max nTPM: 128.5
Min nTPM: 76.1
Sample A Female 128.5
Sample B Female 76.1
Sample C Male 90.7
Sample D Male 109.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 120.8
Min nTPM: 111.3
Sample A Male 115.9
Sample B Male 113.4
Sample C Female 111.3
Sample D Female 120.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71656904 Antisense, RP_050927_04_E05, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.