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CLDND1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:643.7 nTPM
HPA:643.7 nTPM
GTEx:1422.3 nTPM
FANTOM5:1046.0 Scaled Tags Per Million
Pig:148.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 643.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 568.2
1981 Female, age 72, midline 669.0
2048 Male, age 55, midline 569.2
2194 Female, age 79, both hemispheres 554.4
2816 Male, age 47, midline 553.5
2565 Male, age 75, midline 494.8
Cervical spinal cord, dorsal horn
nTPM: 643.7
2296 Male, age 66, both hemispheres 918.7
2173 Female, age 72, unknown 834.0
2069 Male, age 47, both hemispheres 643.3
1877 Male, age 55, unknown 561.0
2297 Male, age 75, both hemispheres 456.4
2721 Male, age 90, both hemispheres 449.0
Cervical spinal cord, ventral horn
nTPM: 639.7
2068 Male, age 55, unknown 727.7
2098 Female, age 72, unknown 680.0
2480 Male, age 75, both hemispheres 617.0
2809 Male, age 90, both hemispheres 610.7
2820 Female, age 79, both hemispheres 604.2
2295 Male, age 66, both hemispheres 598.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1422.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1422.3
Samples: 159

Max nTPM: 2711.9
Min nTPM: 374.2
Std nTPM: 446.2
Median nTPM: 1397.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2711.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2681.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2598.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2443.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2392.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2375.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2318.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2243.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2241.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2225.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2214.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2152.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2128.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2012.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2001.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1988.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1982.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1975.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1925.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1924.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1922.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1922.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1907.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1859.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1857.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1820.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1798.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1796.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1791.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1775.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1766.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1754.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1749.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1723.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1710.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1694.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1687.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1676.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1670.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1669.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1659.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1657.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1654.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1639.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1638.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1623.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1615.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1612.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1599.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1593.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1587.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1584.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1583.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1578.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1576.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1574.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1567.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1554.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1549.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1545.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1531.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1524.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1520.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1516.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1507.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1477.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1475.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1466.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1463.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1461.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1453.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1446.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1443.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1437.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1433.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1416.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1403.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1401.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1398.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1397.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1396.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1393.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1385.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1385.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1357.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1347.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1344.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1341.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1341.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1338.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1335.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1328.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1323.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1317.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1301.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1297.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1296.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1290.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1275.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1263.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1258.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1254.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1248.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1235.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1232.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1229.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1223.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1217.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1216.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1210.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1195.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1184.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1182.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1177.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1173.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1156.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1149.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1144.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1142.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1142.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1134.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1107.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1107.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1102.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1101.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1099.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1093.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1079.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1069.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1068.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1060.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1055.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1046.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 993.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 959.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 944.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 938.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 903.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 901.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 896.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 893.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 870.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 867.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 861.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 789.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 776.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 774.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 770.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 745.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 733.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 720.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 683.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 674.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 673.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 672.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 592.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 576.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 529.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 374.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1046.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1046.0
FF:10159-103A6 76 years, female 1224.4
FF:10181-103D1 60 years, female 867.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 122.0
Samples: 4

Max nTPM: 139.3
Min nTPM: 113.7
Sample A Female 119.1
Sample B Female 139.3
Sample C Male 113.7
Sample D Male 115.7
Ventral spinal cord
nTPM: 148.5
Samples: 4

Max nTPM: 174.2
Min nTPM: 119.7
Sample A Female 153.8
Sample B Female 146.1
Sample C Male 119.7
Sample D Male 174.2

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