BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:99.3 nTPM
HPA:99.3 nTPM
GTEx:76.1 nTPM
FANTOM5:194.6 Scaled Tags Per Million
Pig:60.2 nTPM
Mouse:156.9 nTPM
Allen mouse:13.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA065424
Glial cells High
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 99.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 75.3
2846 Female, age 79, unknown 87.1
1781 Male, age 74, unknown 85.2
2290 Female, age 72, unknown 76.7
1857 Female, age 85, left hemisphere 76.6
1854 Male, age 80, left hemisphere 71.5
2288 Male, age 75, left hemisphere 69.1
2481 Female, age 94, left hemisphere 68.8
2289 Male, age 61, right hemisphere 67.5
Claustrum
nTPM: 94.2
2568 Male, age 61, both hemispheres 103.7
2645 Female, age 72, unknown 100.9
2196 Female, age 79, unknown 98.2
2198 Male, age 80, both hemispheres 97.7
1956 Male, age 74, unknown 95.1
2284 Female, age 91, both hemispheres 90.6
2491 Male, age 75, both hemispheres 90.3
2392 Female, age 94, both hemispheres 85.6
2292 Female, age 85, both hemispheres 85.4
Globus pallidus, externus
nTPM: 93.8
2646 Male, age 61, right hemisphere 101.3
2772 Female, age 79, unknown 96.6
2567 Female, age 72, unknown 93.3
2395 Male, age 75, both hemispheres 92.2
1996 Male, age 80, right hemisphere 85.6
Globus pallidus, internus
nTPM: 91.3
2483 Female, age 94, right hemisphere 99.5
2287 Male, age 75, right hemisphere 97.5
2566 Female, age 72, unknown 95.7
2778 Female, age 91, both hemispheres 94.3
2037 Male, age 80, right hemisphere 88.6
1818 Male, age 74, unknown 85.4
2111 Female, age 85, right hemisphere 78.3
Nucleus accumbens
nTPM: 76.8
2698 Female, age 72, unknown 91.1
1783 Male, age 74, unknown 83.9
1856 Female, age 91, right hemisphere 82.3
1806 Female, age 85, left hemisphere 79.1
2391 Female, age 94, left hemisphere 72.6
2824 Male, age 61, right hemisphere 69.4
2732 Male, age 80, right hemisphere 68.2
2286 Male, age 75, left hemisphere 68.1
Nucleus basalis of Meynert
nTPM: 94.3
2569 Male, age 61, both hemispheres 104.9
2821 Male, age 75, both hemispheres 99.6
2484 Female, age 94, left hemisphere 89.0
2393 Male, age 80, right hemisphere 83.8
Nucleus of the diagonal band
nTPM: 99.3
1812 Female, age 91, both hemispheres 133.5
2775 Male, age 80, right hemisphere 101.3
2195 Female, age 85, both hemispheres 94.8
2029 Male, age 61, right hemisphere 91.2
1979 Male, age 74, unknown 75.5
Olfactory tubercle
nTPM: 89.8
1846 Male, age 80, right hemisphere 105.1
2487 Female, age 94, left hemisphere 89.1
1998 Female, age 91, both hemispheres 86.9
2856 Male, age 75, right hemisphere 78.1
Putamen
nTPM: 80.3
2647 Male, age 75, left hemisphere 99.1
1829 Male, age 74, unknown 83.0
2466 Female, age 79, unknown 81.3
2489 Female, age 72, unknown 80.2
2482 Female, age 94, left hemisphere 74.4
1838 Male, age 80, right hemisphere 73.2
1937 Female, age 91, right hemisphere 71.1
Septal nuclei
nTPM: 94.4
2629 Female, age 94, right hemisphere 129.8
2031 Female, age 72, unknown 97.7
1960 Male, age 74, unknown 96.0
2009 Female, age 91, both hemispheres 92.8
2059 Female, age 85, both hemispheres 83.1
2199 Male, age 80, right hemisphere 80.9
2394 Male, age 61, left hemisphere 80.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 76.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 70.5
Samples: 246

Max nTPM: 114.3
Min nTPM: 51.8
Std nTPM: 8.8
Median nTPM: 69.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 114.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 101.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 93.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 92.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 92.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 89.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 89.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 88.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 88.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 87.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 86.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.6
Samples: 246

Max nTPM: 136.4
Min nTPM: 44.0
Std nTPM: 11.8
Median nTPM: 71.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 136.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 127.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 110.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 100.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 97.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 97.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 96.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 96.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 94.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 94.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 93.5
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Brain - Putamen (basal ganglia)
Average nTPM: 76.1
Samples: 205

Max nTPM: 120.4
Min nTPM: 54.1
Std nTPM: 9.8
Median nTPM: 74.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 120.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 109.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 108.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 105.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 103.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 103.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 95.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 95.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 95.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 93.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 93.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 194.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.8
FF:10164-103B2 76 years, female 124.8
Globus pallidus
Scaled Tags Per Million: 194.6
FF:10175-103C4 60 years, female 212.3
FF:10161-103A8 76 years, female 176.8
Nucleus accumbens
Scaled Tags Per Million: 153.4
FF:10037-101F1 23-56 years, mixed 153.4
Putamen
Scaled Tags Per Million: 143.8
FF:10176-103C5 60 years, female 143.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 60.2
Pig sample Sample description nTPM
Caudate
nTPM: 57.6
Samples: 4

Max nTPM: 68.7
Min nTPM: 48.3
Sample A Female 48.3
Sample B Female 58.7
Sample C Male 68.7
Sample D Male 54.7
Putamen
nTPM: 56.8
Samples: 4

Max nTPM: 68.1
Min nTPM: 46.9
Sample A Female 49.5
Sample B Female 46.9
Sample C Male 68.1
Sample D Male 62.5
Septum
nTPM: 60.2
Samples: 4

Max nTPM: 79.2
Min nTPM: 50.5
Sample A Female 58.6
Sample B Female 52.4
Sample C Male 79.2
Sample D Male 50.5
Ventral pallidum
nTPM: 59.8
Samples: 4

Max nTPM: 82.5
Min nTPM: 50.1
Sample A Female 52.9
Sample B Female 50.1
Sample C Male 82.5
Sample D Male 53.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 156.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 155.5
Samples: 4

Max nTPM: 162.2
Min nTPM: 147.6
Sample A Male 154.7
Sample B Male 162.2
Sample C Female 147.6
Sample D Female 157.5
Septum
nTPM: 132.0
Samples: 4

Max nTPM: 151.5
Min nTPM: 122.6
Sample A Male 151.5
Sample B Male 122.6
Sample C Female 124.8
Sample D Female 129.1
Ventral forebrain
nTPM: 156.9
Samples: 4

Max nTPM: 166.2
Min nTPM: 151.4
Sample A Male 151.4
Sample B Male 166.2
Sample C Female 153.2
Sample D Female 156.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.5
68924787 Antisense, RP_050309_01_A05, Mouse strain C57BL/6J (56 days, male) 13.5
Pallidum
Expression energy: 12.6
68924787 Antisense, RP_050309_01_A05, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

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