MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:131.1 nTPM
HPA:131.1 nTPM
GTEx:111.3 nTPM
FANTOM5:220.9 Scaled Tags Per Million
Pig:82.2 nTPM
Mouse:145.6 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.9
1827 Male, age 72, unknown 125.9
2666 Male, age 74, left hemisphere 123.8
2828 Female, age 72, unknown 121.9
2586 Male, age 75, left hemisphere 113.9
1870 Female, age 42, unknown 100.6
1830 Male, age 51, unknown 99.3
1833 Male, age 53, unknown 98.5
2019 Male, age 18, unknown 97.1
2411 Female, age 72, unknown 96.3
2219 Male, age 76, both hemispheres 81.7
Dorsal raphe nucleus
nTPM: 105.9
2047 Male, age 72, unknown 119.2
1828 Male, age 53, unknown 113.7
2298 Female, age 72, unknown 101.7
2016 Female, age 72, unknown 98.9
2750 Male, age 76, both hemispheres 96.0
Inferior colliculus
nTPM: 93.9
1848 Female, age 42, unknown 100.4
1890 Male, age 53, unknown 94.3
2849 Male, age 72, unknown 93.9
2097 Female, age 72, unknown 86.8
Median raphe nucleus
nTPM: 110.4
2220 Male, age 76, midline 110.4
Pedunculopontine tegmental nucleus
nTPM: 96.4
2334 Male, age 80, both hemispheres 104.2
1921 Female, age 85, both hemispheres 98.9
2338 Male, age 61, both hemispheres 86.2
Periaquaductal grey, anterior
nTPM: 126.4
1947 Male, age 18, unknown 128.4
1795 Male, age 51, unknown 125.6
2502 Female, age 75, unknown 125.3
Periaquaductal grey, dorsal
nTPM: 103.0
1831 Male, age 72, unknown 119.0
2850 Male, age 76, both hemispheres 110.3
1840 Male, age 53, unknown 98.4
2464 Female, age 72, unknown 84.3
Periaquaductal grey, lateral
nTPM: 111.2
2272 Male, age 74, both hemispheres 122.2
2053 Male, age 18, unknown 111.1
2140 Male, age 76, both hemispheres 100.3
Pretectal area
nTPM: 122.3
2273 Male, age 74, both hemispheres 160.5
2407 Male, age 75, both hemispheres 144.1
2667 Female, age 75, unknown 142.5
1816 Male, age 51, unknown 132.5
1944 Female, age 72, unknown 126.5
1815 Male, age 53, unknown 114.2
2007 Male, age 72, unknown 114.0
2825 Male, age 18, unknown 112.6
1817 Female, age 42, unknown 111.7
2316 Male, age 76, right hemisphere 93.5
2224 Female, age 72, unknown 93.4
Red nucleus
nTPM: 92.5
2584 Male, age 75, left hemisphere 105.9
2725 Female, age 75, unknown 105.0
1821 Female, age 72, unknown 102.7
2588 Male, age 74, left hemisphere 96.1
2785 Male, age 18, unknown 96.0
1954 Female, age 42, unknown 90.7
2503 Female, age 72, unknown 89.3
1865 Male, age 51, unknown 89.1
2769 Male, age 72, unknown 87.2
2227 Male, age 72, unknown 87.0
1904 Male, age 53, unknown 82.8
2823 Male, age 76, right hemisphere 78.6
Substantia nigra
nTPM: 131.1
1916 Female, age 42, unknown 164.9
1941 Male, age 53, unknown 151.0
2665 Male, age 74, both hemispheres 146.0
1851 Male, age 51, unknown 137.7
2699 Male, age 18, unknown 135.0
1889 Female, age 72, unknown 118.7
2583 Male, age 75, right hemisphere 118.5
2590 Female, age 75, unknown 117.5
2409 Female, age 72, unknown 112.9
2241 Male, age 72, unknown 108.4
Superior colliculus
nTPM: 108.7
2664 Male, age 75, both hemispheres 145.1
2587 Male, age 74, left hemisphere 130.4
1796 Male, age 53, unknown 119.7
2261 Male, age 18, unknown 112.7
2087 Female, age 72, unknown 112.4
1839 Male, age 51, unknown 107.6
1995 Male, age 72, unknown 96.5
1913 Female, age 42, unknown 93.5
2668 Female, age 75, unknown 88.9
1895 Male, age 76, right hemisphere 80.6
Ventral tegmental area
nTPM: 115.1
1915 Female, age 42, unknown 130.5
2410 Female, age 72, unknown 129.8
2218 Male, age 76, both hemispheres 111.4
1942 Male, age 51, unknown 108.1
2021 Male, age 53, unknown 105.8
2223 Female, age 72, unknown 104.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.3
Samples: 139

Max nTPM: 198.1
Min nTPM: 73.5
Std nTPM: 23.1
Median nTPM: 104.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 198.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 183.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 174.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 165.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 164.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 162.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 160.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 157.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 155.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 153.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 149.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.9
FF:10158-103A5 76 years, female 220.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.2
Pig sample Sample description nTPM
Midbrain
nTPM: 72.9
Samples: 4

Max nTPM: 84.4
Min nTPM: 55.9
Sample A Female 82.3
Sample B Female 55.9
Sample C Male 84.4
Sample D Male 69.1
Periaqueductal gray
nTPM: 64.3
Samples: 3

Max nTPM: 72.7
Min nTPM: 59.5
Sample B Female 59.5
Sample C Male 72.7
Sample D Male 60.7
Substantia nigra
nTPM: 71.5
Samples: 4

Max nTPM: 83.2
Min nTPM: 56.4
Sample A Female 83.2
Sample B Female 64.8
Sample C Male 81.7
Sample D Male 56.4
Superior colliculi
nTPM: 82.2
Samples: 4

Max nTPM: 85.3
Min nTPM: 78.7
Sample A Female 85.3
Sample B Female 84.3
Sample C Male 78.7
Sample D Male 80.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 145.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 145.5
Samples: 4

Max nTPM: 156.3
Min nTPM: 136.5
Sample A Male 136.5
Sample B Male 156.3
Sample C Female 141.1
Sample D Female 148.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
68924787 Antisense, RP_050309_01_A05, Mouse strain C57BL/6J (56 days, male) 14.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.