MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:43.1 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:28.3 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.7
1830 Male, age 51, unknown 23.6
1833 Male, age 53, unknown 22.8
1870 Female, age 42, unknown 22.8
2219 Male, age 76, both hemispheres 22.6
2666 Male, age 74, left hemisphere 22.5
1827 Male, age 72, unknown 21.0
2019 Male, age 18, unknown 21.0
2411 Female, age 72, unknown 20.8
2828 Female, age 72, unknown 20.1
2586 Male, age 75, left hemisphere 19.4
Dorsal raphe nucleus
nTPM: 19.2
2016 Female, age 72, unknown 21.7
1828 Male, age 53, unknown 20.2
2750 Male, age 76, both hemispheres 19.3
2047 Male, age 72, unknown 18.4
2298 Female, age 72, unknown 16.3
Inferior colliculus
nTPM: 21.3
2849 Male, age 72, unknown 23.7
1848 Female, age 42, unknown 21.2
2097 Female, age 72, unknown 20.2
1890 Male, age 53, unknown 19.9
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Pedunculopontine tegmental nucleus
nTPM: 21.3
2338 Male, age 61, both hemispheres 21.7
2334 Male, age 80, both hemispheres 21.2
1921 Female, age 85, both hemispheres 21.0
Periaquaductal grey, anterior
nTPM: 19.8
1947 Male, age 18, unknown 20.9
2502 Female, age 75, unknown 20.7
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 21.4
1831 Male, age 72, unknown 21.8
2850 Male, age 76, both hemispheres 21.5
2464 Female, age 72, unknown 21.4
1840 Male, age 53, unknown 21.0
Periaquaductal grey, lateral
nTPM: 19.8
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 19.9
2272 Male, age 74, both hemispheres 18.5
Pretectal area
nTPM: 20.0
2316 Male, age 76, right hemisphere 22.3
2825 Male, age 18, unknown 21.7
2407 Male, age 75, both hemispheres 21.1
1815 Male, age 53, unknown 20.9
2224 Female, age 72, unknown 20.0
1817 Female, age 42, unknown 19.5
1944 Female, age 72, unknown 19.3
1816 Male, age 51, unknown 19.1
2273 Male, age 74, both hemispheres 19.1
2667 Female, age 75, unknown 18.8
2007 Male, age 72, unknown 18.1
Red nucleus
nTPM: 23.6
2503 Female, age 72, unknown 27.8
2725 Female, age 75, unknown 25.1
1954 Female, age 42, unknown 25.0
1904 Male, age 53, unknown 24.6
2588 Male, age 74, left hemisphere 24.3
1865 Male, age 51, unknown 23.7
1821 Female, age 72, unknown 23.4
2823 Male, age 76, right hemisphere 23.2
2227 Male, age 72, unknown 22.5
2584 Male, age 75, left hemisphere 21.9
2769 Male, age 72, unknown 21.5
2785 Male, age 18, unknown 20.4
Substantia nigra
nTPM: 20.0
2665 Male, age 74, both hemispheres 22.9
2699 Male, age 18, unknown 22.7
2409 Female, age 72, unknown 20.8
2590 Female, age 75, unknown 20.7
2241 Male, age 72, unknown 20.3
1889 Female, age 72, unknown 19.6
1851 Male, age 51, unknown 19.3
2583 Male, age 75, right hemisphere 19.3
1941 Male, age 53, unknown 18.6
1916 Female, age 42, unknown 16.1
Superior colliculus
nTPM: 21.2
1995 Male, age 72, unknown 24.6
1839 Male, age 51, unknown 23.4
1895 Male, age 76, right hemisphere 23.4
1913 Female, age 42, unknown 23.3
2587 Male, age 74, left hemisphere 23.3
2664 Male, age 75, both hemispheres 19.5
1796 Male, age 53, unknown 19.2
2668 Female, age 75, unknown 19.2
2087 Female, age 72, unknown 18.2
2261 Male, age 18, unknown 17.9
Ventral tegmental area
nTPM: 20.2
2223 Female, age 72, unknown 22.0
2021 Male, age 53, unknown 20.8
2410 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 19.9
1915 Female, age 42, unknown 19.7
2218 Male, age 76, both hemispheres 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.1
Samples: 139

Max nTPM: 84.9
Min nTPM: 24.3
Std nTPM: 12.5
Median nTPM: 40.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 84.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 83.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 82.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 69.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 66.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 65.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 62.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 61.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.2
FF:10158-103A5 76 years, female 109.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.6
Pig sample Sample description nTPM
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 64.8
Min nTPM: 48.3
Sample A Female 64.8
Sample B Female 56.6
Sample C Male 48.3
Sample D Male 56.7
Periaqueductal gray
nTPM: 56.6
Samples: 3

Max nTPM: 60.3
Min nTPM: 52.3
Sample B Female 52.3
Sample C Male 60.3
Sample D Male 57.2
Substantia nigra
nTPM: 51.1
Samples: 4

Max nTPM: 56.9
Min nTPM: 46.1
Sample A Female 49.2
Sample B Female 46.1
Sample C Male 52.0
Sample D Male 56.9
Superior colliculi
nTPM: 51.2
Samples: 4

Max nTPM: 61.2
Min nTPM: 39.9
Sample A Female 53.6
Sample B Female 39.9
Sample C Male 49.9
Sample D Male 61.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 30.5
Min nTPM: 24.9
Sample A Male 24.9
Sample B Male 28.9
Sample C Female 30.5
Sample D Female 29.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69262335 Antisense, RP_050303_02_B05, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.