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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:157.9 nTPM
HPA:157.9 nTPM
FANTOM5:232.1 Scaled Tags Per Million
Pig:160.8 nTPM
Mouse:383.4 nTPM
Allen mouse:20.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 157.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 140.3
2396 Male, age 61, right hemisphere 169.1
2032 Female, age 42, unknown 130.3
2497 Male, age 66, unknown 121.5
Centromedial thalamic nucleus
nTPM: 110.3
2401 Male, age 76, right hemisphere 136.7
2279 Female, age 85, left hemisphere 84.0
Habenula
nTPM: 150.8
1957 Male, age 80, both hemispheres 165.0
2276 Male, age 66, unknown 158.2
2203 Male, age 61, left hemisphere 143.6
2252 Male, age 62, unknown 136.5
Lateral geniculate body
nTPM: 140.7
2106 Female, age 67, right hemisphere 181.7
2857 Male, age 74, right hemisphere 160.1
1953 Male, age 62, unknown 142.7
2399 Male, age 61, left hemisphere 135.8
2035 Female, age 72, unknown 135.0
2575 Female, age 94, right hemisphere 131.8
2659 Male, age 66, unknown 125.2
2841 Male, age 80, both hemispheres 113.5
Lateral thalamic nuclei
nTPM: 131.3
1903 Male, age 76, left hemisphere 138.3
2577 Male, age 74, both hemispheres 134.1
2765 Female, age 67, both hemispheres 133.1
2573 Female, age 94, left hemisphere 132.2
2661 Female, age 72, unknown 118.6
Medial dorsal thalamic nucleus
nTPM: 147.1
2283 Male, age 80, right hemisphere 163.3
2572 Female, age 94, right hemisphere 163.1
1971 Male, age 61, right hemisphere 162.4
2498 Male, age 66, unknown 162.3
2402 Female, age 67, both hemispheres 154.6
2026 Male, age 62, unknown 152.3
1810 Male, age 48, unknown 151.2
2576 Male, age 74, both hemispheres 150.3
1859 Male, age 76, both hemispheres 146.0
2492 Male, age 75, right hemisphere 142.8
1930 Female, age 42, unknown 139.7
2039 Female, age 72, unknown 120.0
2660 Female, age 72, unknown 103.9
Medial geniculate body
nTPM: 138.4
2650 Female, age 94, left hemisphere 159.6
1811 Female, age 42, unknown 157.9
2657 Male, age 74, right hemisphere 148.4
2207 Male, age 80, right hemisphere 142.9
2217 Female, age 72, unknown 128.2
2571 Male, age 75, right hemisphere 119.3
2049 Male, age 76, both hemispheres 112.4
Nucleus reuniens
nTPM: 110.9
2212 Female, age 67, left hemisphere 140.9
2205 Male, age 80, left hemisphere 111.4
2210 Female, age 85, left hemisphere 80.5
Nucleus rhomboideus
nTPM: 124.7
2206 Male, age 80, both hemispheres 159.4
2213 Female, age 67, left hemisphere 129.2
2280 Female, age 85, left hemisphere 85.6
Posterior thalamic nucleus
nTPM: 157.9
2649 Female, age 94, both hemispheres 176.4
2655 Male, age 74, right hemisphere 158.7
2495 Female, age 67, right hemisphere 150.7
2266 Male, age 76, right hemisphere 145.8
Pulvinar
nTPM: 145.8
2724 Male, age 74, right hemisphere 161.8
1972 Male, age 62, unknown 156.7
2499 Male, age 66, unknown 152.4
2496 Female, age 67, right hemisphere 149.2
1932 Male, age 80, right hemisphere 146.9
1929 Male, age 48, unknown 141.9
2214 Male, age 76, right hemisphere 140.9
1899 Female, age 42, unknown 139.7
2582 Female, age 72, unknown 138.2
2398 Male, age 61, left hemisphere 130.3
Subthalamic nucleus
nTPM: 118.1
2406 Female, age 72, unknown 138.2
2275 Male, age 66, unknown 132.3
2124 Male, age 62, unknown 122.0
2779 Female, age 42, unknown 118.7
2658 Male, age 74, both hemispheres 114.3
2282 Male, age 61, both hemispheres 111.3
2056 Female, age 72, unknown 105.1
2216 Male, age 48, unknown 102.9
Ventral posterolateral thalamic nucleus
nTPM: 129.1
2197 Male, age 80, both hemispheres 155.1
2740 Male, age 76, right hemisphere 139.9
2397 Male, age 61, right hemisphere 132.7
2578 Male, age 74, both hemispheres 126.4
2570 Male, age 75, right hemisphere 121.8
2581 Female, age 72, unknown 98.9
Ventral posteromedial thalamic nucleus
nTPM: 141.3
2202 Male, age 61, left hemisphere 157.1
2653 Male, age 74, both hemispheres 148.7
2758 Male, age 80, both hemispheres 147.8
2281 Male, age 75, right hemisphere 130.6
2127 Male, age 76, right hemisphere 122.4
Ventral thalamic nuclei
nTPM: 131.7
1845 Male, age 48, unknown 149.3
2285 Male, age 62, unknown 142.1
1860 Male, age 76, both hemispheres 141.7
2204 Male, age 80, both hemispheres 133.6
1912 Female, age 42, unknown 132.7
2580 Male, age 66, unknown 129.5
2652 Male, age 74, left hemisphere 128.9
2291 Female, age 72, unknown 114.8
2858 Female, age 72, unknown 112.3
Ventromedial nucleus
nTPM: 127.7
1982 Female, age 72, unknown 129.9
1822 Female, age 42, unknown 125.5
Zona incerta
nTPM: 112.6
2208 Male, age 80, right hemisphere 139.8
2403 Male, age 62, unknown 111.8
2822 Male, age 74, right hemisphere 106.5
2663 Female, age 72, unknown 105.6
2215 Male, age 66, unknown 99.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 232.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 232.1
FF:10154-103A1 76 years, female 232.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.8
Pig sample Sample description nTPM
Thalamus
nTPM: 160.8
Samples: 4

Max nTPM: 197.5
Min nTPM: 117.7
Sample A Female 169.8
Sample B Female 197.5
Sample C Male 158.2
Sample D Male 117.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 383.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 383.5
Samples: 4

Max nTPM: 432.2
Min nTPM: 338.2
Sample A Male 346.3
Sample B Male 432.2
Sample C Female 338.2
Sample D Female 417.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.6
68799083 Antisense, RP_050217_02_A05, Mouse strain C57BL/6J (56 days, male) 20.6

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