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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:540.8 nTPM
GTEx:540.8 nTPM
FANTOM5:921.8 Scaled Tags Per Million
Pig:243.9 nTPM
Mouse:694.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 540.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 540.8
Samples: 105

Max nTPM: 725.9
Min nTPM: 318.3
Std nTPM: 68.9
Median nTPM:
237_1 82 years, male 725.9
35_1 74 years, female 703.9
6_1 73 years, female 696.6
321_1 62 years, female 670.5
352_1 62 years, male 669.4
316_1 62 years, male 656.4
350_1 84 years, female 647.3
386_1 76 years, male 643.2
375_1 74 years, female 639.2
355_1 70 years, female 636.8
322_1 76 years, male 630.7
126_1 63 years, male 624.5
324_1 76 years, male 616.8
218_1 71 years, female 614.3
153_1 70 years, female 609.3
347_1 72 years, male 607.5
377_1 82 years, female 606.6
526_1 61 years, male 606.3
319_1 81 years, male 605.0
142_1 61 years, female 601.0
17_1 71 years, male 599.9
81_1 67 years, male 596.6
43_1 64 years, female 593.9
2_1 77 years, female 591.1
9_1 66 years, female 587.0
229_1 69 years, female 583.8
115_1 83 years, male 583.7
99_1 64 years, male 580.2
246_1 77 years, male 579.6
396_1 62 years, male 579.3
318_1 68 years, male 576.0
376_1 75 years, female 575.2
149_1 88 years, male 574.1
139_1 64 years, female 569.4
217_1 76 years, male 566.9
18_1 88 years, male 565.1
42_1 85 years, male 561.7
405_1 91 years, male 560.6
348_1 84 years, male 560.1
120_1 70 years, female 559.3
389_1 86 years, female 557.7
447_1 81 years, male 557.2
243_1 75 years, male 555.0
379_1 60 years, male 554.8
518_1 75 years, female 554.4
32_1 67 years, male 553.7
353_1 82 years, female 551.7
177_1 74 years, male 550.1
415_1 77 years, female 547.6
117_1 61 years, male 547.0
251_1 78 years, male 546.4
286_1 68 years, female 545.3
468_1 89 years, male 543.1
311_1 78 years, male 543.0
466_1 57 years, female 542.0
172_1 72 years, female 540.9
291_1 76 years, male 540.8
404_1 82 years, female 534.2
292_1 71 years, male 531.5
189_1 76 years, male 530.1
320_1 89 years, female 530.1
315_1 62 years, female 528.1
335_1 73 years, female 522.8
499_1 55 years, female 518.9
349_1 83 years, male 515.9
265_1 87 years, male 513.6
354_1 81 years, female 513.2
264_1 73 years, female 509.5
384_1 83 years, male 508.6
414_1 84 years, female 507.8
425_1 59 years, female 504.6
173_1 67 years, male 502.2
137_1 83 years, male 499.9
4_1 88 years, female 498.0
163_1 78 years, male 498.0
109_1 81 years, female 494.5
506_1 65 years, male 494.1
266_1 85 years, male 493.1
406_1 79 years, male 490.3
254_1 77 years, female 489.4
119_1 70 years, female 487.3
162_1 79 years, female 486.7
480_1 63 years, male 485.4
293_1 68 years, female 484.6
313_1 79 years, female 482.9
495_1 57 years, female 482.7
356_1 87 years, female 480.8
517_1 88 years, male 479.1
501_1 88 years, male 478.9
490_1 67 years, female 473.9
413_1 59 years, female 473.8
503_1 68 years, male 472.7
145_1 84 years, male 469.8
317_1 60 years, male 456.7
491_1 89 years, female 456.3
89_1 63 years, male 453.5
307_1 66 years, female 453.3
41_1 94 years, female 445.6
295_1 61 years, female 437.6
394_1 75 years, female 436.4
351_1 91 years, male 435.6
452_1 88 years, female 425.7
288_1 66 years, female 411.1
314_1 67 years, male 404.4
308_1 70 years, female 318.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 921.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 921.8
FF:10030-101E3 24-65 years, mixed 921.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 243.9
Pig sample Sample description nTPM
Retina
nTPM: 243.9
Samples: 4

Max nTPM: 262.1
Min nTPM: 217.7
Sample A Female 251.2
Sample B Female 262.1
Sample C Male 244.5
Sample D Male 217.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 694.1
Mouse sample Sample description nTPM
Retina
nTPM: 694.1
Samples: 4

Max nTPM: 864.2
Min nTPM: 525.7
Sample A Male 864.2
Sample B Male 609.8
Sample C Female 525.7
Sample D Female 776.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.