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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:226.6 nTPM
HPA:226.6 nTPM
GTEx:143.4 nTPM
FANTOM5:511.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA039319
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 226.6
overview
Male, age 65
Small intestine sample 232
nTPM: 257.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 217.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 205.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 225.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 143.4
Samples: 187

Max nTPM: 448.1
Min nTPM: 46.4
Std nTPM: 61.0
Median nTPM: 142.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 448.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 340.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 329.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 276.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 272.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 270.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 267.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 263.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 262.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 260.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 259.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 252.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 245.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 239.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 237.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 233.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 221.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 221.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 217.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 216.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 214.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 212.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 206.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 206.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 203.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 200.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 200.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 197.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 195.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 195.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 194.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 190.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 190.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 187.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 186.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 185.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 183.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 181.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 180.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 179.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 178.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 177.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 176.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 176.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 173.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 172.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 171.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 171.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 171.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 171.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 170.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 170.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 170.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 169.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 169.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 168.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 167.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 166.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 166.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 164.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 164.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 163.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 160.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 160.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 159.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 158.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 158.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 157.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 156.8
GTEX-1192X-2526-SM-59868 50-59 years, male 156.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 155.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 154.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 153.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 151.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 150.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 150.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 150.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 150.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 150.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 149.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 149.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 148.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 148.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 147.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 147.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 147.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 146.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 146.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 145.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 145.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 145.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 144.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 143.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 142.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 142.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 140.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 140.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 140.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 138.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 136.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 133.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 133.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 133.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 131.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 130.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 129.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 129.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 128.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 126.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 126.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 126.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 126.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 124.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 124.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 122.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 120.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 118.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 118.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 118.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 118.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 117.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 115.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 112.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 111.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 111.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 110.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 109.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 108.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 107.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 104.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 104.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 104.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 102.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 102.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 102.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 100.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 100.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 98.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 98.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 98.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 95.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 95.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 93.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 92.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 91.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 91.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 91.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 89.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 88.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 88.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 88.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 87.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 84.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 83.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 82.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 81.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 80.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 80.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 79.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 79.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 78.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 78.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 76.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 73.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 72.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 72.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 70.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 70.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 70.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 69.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 69.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 68.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 68.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 67.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 66.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 66.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 66.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 65.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 65.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 58.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 57.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 57.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 57.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 53.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 51.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 46.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 511.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 511.0
FF:10024-101D6 15,40,85 years, mixed 511.0

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