We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAPRE3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MAPRE3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:121.3 nTPM
FANTOM5:363.3 Scaled Tags Per Million
Pig:123.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA009263
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 121.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 121.3
Samples: 246

Max nTPM: 252.3
Min nTPM: 51.0
Std nTPM: 36.9
Median nTPM: 120.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 252.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 207.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 196.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 196.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 191.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 191.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 186.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 186.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 182.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 180.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 180.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 180.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 179.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 179.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 178.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 178.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 177.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 176.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 176.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 175.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 174.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 173.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 173.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 173.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 171.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 170.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 170.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 168.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 167.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 166.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 166.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 166.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 165.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 165.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 164.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 164.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 163.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 163.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 161.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 160.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 159.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 159.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 159.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 158.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 158.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 158.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 157.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 156.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 155.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 155.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 155.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 153.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 153.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 152.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 151.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 151.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 150.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 150.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 150.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 149.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 149.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 149.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 147.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 146.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 145.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 144.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 144.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 143.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 142.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 142.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 141.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 140.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 139.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 138.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 138.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 137.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 137.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 137.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 136.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 136.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 136.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 136.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 135.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 135.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 134.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 134.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 134.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 134.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 133.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 133.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 133.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 133.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 132.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 131.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 131.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 131.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 131.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 131.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 131.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 131.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 131.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 131.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 130.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 130.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 130.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 130.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 130.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 129.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 129.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 128.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 126.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 124.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 123.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 123.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 123.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 123.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 121.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 120.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 120.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 120.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 119.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 119.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 117.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 117.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 116.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 116.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 115.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 114.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 114.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 114.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 114.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 114.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 114.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 114.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 113.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 112.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 112.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 112.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 111.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 111.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 110.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 109.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 108.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 108.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 108.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 107.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 107.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 107.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 106.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 106.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 105.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 104.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 103.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 102.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 102.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 102.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 99.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 98.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 98.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 97.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 96.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 96.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 93.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 92.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 92.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 92.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 91.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 91.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 90.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 90.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 89.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 88.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 88.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 87.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 87.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 86.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 86.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 85.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 85.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 85.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 83.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 82.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 82.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 82.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 81.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 81.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 81.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 80.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 80.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 79.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 79.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 77.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 77.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 76.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 75.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 74.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 74.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 74.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 73.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 73.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 73.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 73.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 73.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 72.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 72.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 71.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 71.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 70.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 69.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 69.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 69.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 68.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 67.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 67.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 66.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 66.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 65.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 63.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 58.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 58.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 58.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 58.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 51.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 51.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 363.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 363.3
FF:10164-103B2 76 years, female 363.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.6
Pig sample Sample description nTPM
Caudate
nTPM: 123.6
Samples: 4

Max nTPM: 154.7
Min nTPM: 105.3
Sample A Female 105.3
Sample B Female 125.1
Sample C Male 154.7
Sample D Male 109.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.