MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:340.2 nTPM
HPA:340.2 nTPM
GTEx:253.9 nTPM
FANTOM5:199.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 340.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 283.0
2411 Female, age 72, unknown 298.9
2828 Female, age 72, unknown 294.7
1827 Male, age 72, unknown 290.2
2019 Male, age 18, unknown 288.6
1870 Female, age 42, unknown 285.5
1833 Male, age 53, unknown 282.9
2586 Male, age 75, left hemisphere 278.7
2666 Male, age 74, left hemisphere 278.2
1830 Male, age 51, unknown 274.7
2219 Male, age 76, both hemispheres 257.9
Dorsal raphe nucleus
nTPM: 340.2
2047 Male, age 72, unknown 366.5
2298 Female, age 72, unknown 365.0
1828 Male, age 53, unknown 346.6
2750 Male, age 76, both hemispheres 312.5
2016 Female, age 72, unknown 310.7
Inferior colliculus
nTPM: 311.7
2097 Female, age 72, unknown 331.5
1890 Male, age 53, unknown 315.5
1848 Female, age 42, unknown 310.9
2849 Male, age 72, unknown 288.8
Median raphe nucleus
nTPM: 312.6
2220 Male, age 76, midline 312.6
Pedunculopontine tegmental nucleus
nTPM: 325.1
2334 Male, age 80, both hemispheres 330.5
2338 Male, age 61, both hemispheres 329.1
1921 Female, age 85, both hemispheres 315.5
Periaquaductal grey, anterior
nTPM: 313.1
1947 Male, age 18, unknown 344.6
2502 Female, age 75, unknown 298.8
1795 Male, age 51, unknown 296.0
Periaquaductal grey, dorsal
nTPM: 296.8
1840 Male, age 53, unknown 311.1
2464 Female, age 72, unknown 297.6
2850 Male, age 76, both hemispheres 296.0
1831 Male, age 72, unknown 282.5
Periaquaductal grey, lateral
nTPM: 289.6
2272 Male, age 74, both hemispheres 299.7
2140 Male, age 76, both hemispheres 286.0
2053 Male, age 18, unknown 283.2
Pretectal area
nTPM: 286.6
2224 Female, age 72, unknown 302.0
2273 Male, age 74, both hemispheres 300.8
1817 Female, age 42, unknown 297.2
2667 Female, age 75, unknown 296.4
2825 Male, age 18, unknown 292.9
1944 Female, age 72, unknown 291.6
1816 Male, age 51, unknown 287.9
2007 Male, age 72, unknown 286.7
2316 Male, age 76, right hemisphere 272.1
1815 Male, age 53, unknown 268.5
2407 Male, age 75, both hemispheres 256.2
Red nucleus
nTPM: 298.2
1821 Female, age 72, unknown 339.2
2823 Male, age 76, right hemisphere 320.7
1954 Female, age 42, unknown 315.4
2725 Female, age 75, unknown 313.9
2503 Female, age 72, unknown 302.3
2769 Male, age 72, unknown 296.7
2227 Male, age 72, unknown 296.6
1865 Male, age 51, unknown 288.4
1904 Male, age 53, unknown 286.1
2588 Male, age 74, left hemisphere 284.0
2785 Male, age 18, unknown 274.7
2584 Male, age 75, left hemisphere 260.6
Substantia nigra
nTPM: 315.1
2241 Male, age 72, unknown 353.0
1916 Female, age 42, unknown 348.7
1851 Male, age 51, unknown 335.0
1941 Male, age 53, unknown 323.4
2665 Male, age 74, both hemispheres 318.0
1889 Female, age 72, unknown 309.6
2409 Female, age 72, unknown 304.1
2699 Male, age 18, unknown 292.3
2590 Female, age 75, unknown 290.5
2583 Male, age 75, right hemisphere 276.8
Superior colliculus
nTPM: 273.3
2587 Male, age 74, left hemisphere 290.3
1895 Male, age 76, right hemisphere 285.6
1839 Male, age 51, unknown 282.9
2087 Female, age 72, unknown 282.2
1796 Male, age 53, unknown 281.0
2261 Male, age 18, unknown 280.2
2668 Female, age 75, unknown 277.1
1995 Male, age 72, unknown 254.4
2664 Male, age 75, both hemispheres 252.9
1913 Female, age 42, unknown 246.8
Ventral tegmental area
nTPM: 315.4
1915 Female, age 42, unknown 339.6
2410 Female, age 72, unknown 318.8
2218 Male, age 76, both hemispheres 317.7
1942 Male, age 51, unknown 313.7
2223 Female, age 72, unknown 301.4
2021 Male, age 53, unknown 301.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 253.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 253.9
Samples: 139

Max nTPM: 785.6
Min nTPM: 121.0
Std nTPM: 95.6
Median nTPM: 230.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 785.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 595.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 517.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 506.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 488.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 474.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 444.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 411.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 402.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 399.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 388.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 199.5
FF:10158-103A5 76 years, female 199.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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