MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.8 nTPM
HPA:152.8 nTPM
GTEx:114.3 nTPM
FANTOM5:496.8 Scaled Tags Per Million
Pig:142.9 nTPM
Mouse:258.5 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.2
1827 Male, age 72, unknown 151.7
1870 Female, age 42, unknown 150.1
2411 Female, age 72, unknown 148.4
2219 Male, age 76, both hemispheres 146.8
2828 Female, age 72, unknown 140.1
2019 Male, age 18, unknown 138.6
1833 Male, age 53, unknown 137.6
2666 Male, age 74, left hemisphere 137.1
1830 Male, age 51, unknown 136.5
2586 Male, age 75, left hemisphere 135.2
Dorsal raphe nucleus
nTPM: 147.8
2298 Female, age 72, unknown 161.7
2047 Male, age 72, unknown 152.2
2750 Male, age 76, both hemispheres 143.8
1828 Male, age 53, unknown 142.8
2016 Female, age 72, unknown 138.7
Inferior colliculus
nTPM: 141.0
2097 Female, age 72, unknown 148.5
1890 Male, age 53, unknown 140.8
1848 Female, age 42, unknown 138.8
2849 Male, age 72, unknown 136.0
Median raphe nucleus
nTPM: 152.8
2220 Male, age 76, midline 152.8
Pedunculopontine tegmental nucleus
nTPM: 144.5
2334 Male, age 80, both hemispheres 149.9
1921 Female, age 85, both hemispheres 142.7
2338 Male, age 61, both hemispheres 141.1
Periaquaductal grey, anterior
nTPM: 147.0
1947 Male, age 18, unknown 152.7
2502 Female, age 75, unknown 145.3
1795 Male, age 51, unknown 142.9
Periaquaductal grey, dorsal
nTPM: 142.0
1840 Male, age 53, unknown 146.2
2850 Male, age 76, both hemispheres 144.6
2464 Female, age 72, unknown 139.3
1831 Male, age 72, unknown 138.0
Periaquaductal grey, lateral
nTPM: 138.9
2053 Male, age 18, unknown 142.2
2272 Male, age 74, both hemispheres 137.9
2140 Male, age 76, both hemispheres 136.7
Pretectal area
nTPM: 146.3
1816 Male, age 51, unknown 161.1
2007 Male, age 72, unknown 149.7
2224 Female, age 72, unknown 149.0
1817 Female, age 42, unknown 148.3
1944 Female, age 72, unknown 148.1
1815 Male, age 53, unknown 146.7
2667 Female, age 75, unknown 145.8
2825 Male, age 18, unknown 144.4
2407 Male, age 75, both hemispheres 142.8
2273 Male, age 74, both hemispheres 142.0
2316 Male, age 76, right hemisphere 131.1
Red nucleus
nTPM: 140.0
1821 Female, age 72, unknown 150.5
2725 Female, age 75, unknown 146.8
1954 Female, age 42, unknown 145.4
2503 Female, age 72, unknown 140.7
1904 Male, age 53, unknown 140.6
1865 Male, age 51, unknown 140.3
2785 Male, age 18, unknown 137.3
2584 Male, age 75, left hemisphere 137.1
2588 Male, age 74, left hemisphere 136.3
2227 Male, age 72, unknown 136.0
2769 Male, age 72, unknown 135.4
2823 Male, age 76, right hemisphere 133.2
Substantia nigra
nTPM: 148.7
2241 Male, age 72, unknown 162.6
1916 Female, age 42, unknown 155.7
1851 Male, age 51, unknown 151.4
2409 Female, age 72, unknown 150.5
1889 Female, age 72, unknown 150.4
1941 Male, age 53, unknown 149.7
2665 Male, age 74, both hemispheres 144.9
2590 Female, age 75, unknown 141.6
2699 Male, age 18, unknown 140.2
2583 Male, age 75, right hemisphere 139.8
Superior colliculus
nTPM: 141.1
2261 Male, age 18, unknown 147.7
2587 Male, age 74, left hemisphere 147.6
1796 Male, age 53, unknown 147.1
2087 Female, age 72, unknown 143.1
2668 Female, age 75, unknown 141.6
1913 Female, age 42, unknown 140.4
1839 Male, age 51, unknown 137.9
1895 Male, age 76, right hemisphere 137.2
2664 Male, age 75, both hemispheres 136.3
1995 Male, age 72, unknown 132.1
Ventral tegmental area
nTPM: 146.2
2410 Female, age 72, unknown 152.4
1915 Female, age 42, unknown 149.9
2223 Female, age 72, unknown 148.6
1942 Male, age 51, unknown 142.6
2218 Male, age 76, both hemispheres 142.5
2021 Male, age 53, unknown 141.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.3
Samples: 139

Max nTPM: 584.5
Min nTPM: 53.0
Std nTPM: 72.7
Median nTPM: 95.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 584.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 525.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 485.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 310.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 233.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 225.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 217.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 201.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 196.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 169.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 167.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 496.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 496.8
FF:10158-103A5 76 years, female 496.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.9
Pig sample Sample description nTPM
Midbrain
nTPM: 142.9
Samples: 4

Max nTPM: 161.0
Min nTPM: 124.8
Sample A Female 126.9
Sample B Female 124.8
Sample C Male 161.0
Sample D Male 158.7
Periaqueductal gray
nTPM: 130.2
Samples: 3

Max nTPM: 152.8
Min nTPM: 111.3
Sample B Female 111.3
Sample C Male 152.8
Sample D Male 126.4
Substantia nigra
nTPM: 122.7
Samples: 4

Max nTPM: 153.1
Min nTPM: 85.8
Sample A Female 153.1
Sample B Female 106.1
Sample C Male 145.6
Sample D Male 85.8
Superior colliculi
nTPM: 138.6
Samples: 4

Max nTPM: 154.7
Min nTPM: 101.6
Sample A Female 154.4
Sample B Female 101.6
Sample C Male 154.7
Sample D Male 143.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 258.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.5
Samples: 4

Max nTPM: 275.8
Min nTPM: 231.5
Sample A Male 231.5
Sample B Male 275.8
Sample C Female 269.9
Sample D Female 256.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70528611 Antisense, RP_050623_03_A02, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.