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MRPL28
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:89.1 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:79.2 nTPM
Allen mouse:0.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Amygdala
nTPM: 40.8
2814 Male, age 76, right hemisphere 42.9
2514 Male, age 75, right hemisphere 41.7
1987 Female, age 91, left hemisphere 40.7
2517 Female, age 94, left hemisphere 40.3
2695 Female, age 67, right hemisphere 38.6
Basal amygdala
nTPM: 41.0
2243 Female, age 91, right hemisphere 44.5
2609 Male, age 75, right hemisphere 42.6
2110 Male, age 80, left hemisphere 42.1
1955 Male, age 76, both hemispheres 41.7
2685 Female, age 94, left hemisphere 40.8
2827 Female, age 67, right hemisphere 34.6
Central amygdala
nTPM: 40.8
1905 Male, age 76, both hemispheres 44.4
2239 Male, age 80, left hemisphere 42.3
2826 Female, age 94, left hemisphere 40.2
2515 Male, age 75, right hemisphere 39.0
2701 Female, age 91, right hemisphere 38.0
Corticomedial amygdala
nTPM: 41.4
2829 Male, age 80, left hemisphere 43.8
2242 Female, age 91, right hemisphere 43.5
2428 Male, age 75, right hemisphere 41.3
2429 Female, age 94, left hemisphere 40.9
2240 Male, age 76, both hemispheres 40.4
2535 Female, age 67, right hemisphere 38.3
Lateral amygdala
nTPM: 39.7
1883 Male, age 76, both hemispheres 45.1
2534 Female, age 94, left hemisphere 42.6
2516 Male, age 75, right hemisphere 39.9
2255 Female, age 91, right hemisphere 38.6
2256 Male, age 80, left hemisphere 37.1
2830 Female, age 67, right hemisphere 34.9
Stria terminalis, bed nucleus
nTPM: 43.2
1974 Female, age 91, both hemispheres 47.9
2486 Female, age 94, both hemispheres 42.6
2201 Male, age 74, unknown 39.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 89.1
Samples: 152

Max nTPM: 271.0
Min nTPM: 46.0
Std nTPM: 32.5
Median nTPM: 81.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 271.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 222.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 191.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 180.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 173.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 168.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 165.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 163.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 145.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 136.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 134.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 131.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 128.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 121.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 115.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 115.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 114.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 113.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 112.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 111.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 110.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 107.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 106.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 104.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 103.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 102.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 101.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 101.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 100.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 99.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 97.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 97.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 97.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 96.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 95.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 94.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 94.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 93.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 91.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 91.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 90.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 90.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 89.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 89.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 87.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 87.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 86.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 84.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 83.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 79.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 79.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 78.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 78.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 78.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 78.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 78.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 77.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 77.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 75.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 75.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 74.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 74.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 74.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 73.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 71.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 70.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 68.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 68.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 68.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 68.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 67.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 67.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 66.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 65.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 65.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 64.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 64.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 60.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 60.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 58.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 57.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 56.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 55.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 53.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 53.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 52.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 46.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 46.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.7
FF:10151-102I7 76 years, female 14.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.8
Pig sample Sample description nTPM
Amygdala
nTPM: 16.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 13.3
Sample A Female 24.1
Sample B Female 13.8
Sample C Male 16.0
Sample D Male 13.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 79.2
Samples: 4

Max nTPM: 85.4
Min nTPM: 75.9
Sample A Male 76.2
Sample B Male 79.2
Sample C Female 85.4
Sample D Female 75.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.9
68191414 Antisense, RP_041129_01_B05, Mouse strain C57BL/6J (56 days, male) 0.9

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