BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.5 nTPM
HPA:43.5 nTPM
GTEx:35.6 nTPM
FANTOM5:111.3 Scaled Tags Per Million
Mouse:151.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA014060
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.9
2846 Female, age 79, unknown 43.7
2288 Male, age 75, left hemisphere 43.1
2481 Female, age 94, left hemisphere 42.4
2290 Female, age 72, unknown 41.7
1857 Female, age 85, left hemisphere 40.9
1854 Male, age 80, left hemisphere 40.1
1781 Male, age 74, unknown 38.1
2289 Male, age 61, right hemisphere 37.2
Claustrum
nTPM: 37.7
1956 Male, age 74, unknown 41.6
2392 Female, age 94, both hemispheres 41.6
2196 Female, age 79, unknown 40.1
2292 Female, age 85, both hemispheres 37.7
2198 Male, age 80, both hemispheres 37.4
2491 Male, age 75, both hemispheres 36.9
2284 Female, age 91, both hemispheres 35.8
2645 Female, age 72, unknown 34.2
2568 Male, age 61, both hemispheres 33.6
Globus pallidus, externus
nTPM: 40.2
2772 Female, age 79, unknown 46.0
1996 Male, age 80, right hemisphere 44.6
2395 Male, age 75, both hemispheres 44.0
2646 Male, age 61, right hemisphere 33.5
2567 Female, age 72, unknown 33.1
Globus pallidus, internus
nTPM: 43.5
2287 Male, age 75, right hemisphere 51.9
2778 Female, age 91, both hemispheres 47.5
2483 Female, age 94, right hemisphere 43.0
1818 Male, age 74, unknown 42.9
2037 Male, age 80, right hemisphere 42.6
2111 Female, age 85, right hemisphere 42.3
2566 Female, age 72, unknown 34.5
Nucleus accumbens
nTPM: 41.3
2391 Female, age 94, left hemisphere 45.3
2286 Male, age 75, left hemisphere 44.5
2698 Female, age 72, unknown 42.7
1806 Female, age 85, left hemisphere 41.3
1856 Female, age 91, right hemisphere 41.0
1783 Male, age 74, unknown 39.5
2732 Male, age 80, right hemisphere 38.0
2824 Male, age 61, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 39.1
2393 Male, age 80, right hemisphere 42.3
2821 Male, age 75, both hemispheres 41.9
2484 Female, age 94, left hemisphere 38.2
2569 Male, age 61, both hemispheres 34.0
Nucleus of the diagonal band
nTPM: 40.5
1812 Female, age 91, both hemispheres 43.3
2195 Female, age 85, both hemispheres 42.9
2775 Male, age 80, right hemisphere 41.3
2029 Male, age 61, right hemisphere 37.9
1979 Male, age 74, unknown 36.9
Olfactory tubercle
nTPM: 38.2
1846 Male, age 80, right hemisphere 40.7
1998 Female, age 91, both hemispheres 37.8
2487 Female, age 94, left hemisphere 37.6
2856 Male, age 75, right hemisphere 36.5
Putamen
nTPM: 39.9
2482 Female, age 94, left hemisphere 44.1
2466 Female, age 79, unknown 42.2
1838 Male, age 80, right hemisphere 40.6
1937 Female, age 91, right hemisphere 40.6
1829 Male, age 74, unknown 40.3
2489 Female, age 72, unknown 37.3
2647 Male, age 75, left hemisphere 34.5
Septal nuclei
nTPM: 39.6
2031 Female, age 72, unknown 44.8
1960 Male, age 74, unknown 41.8
2009 Female, age 91, both hemispheres 39.6
2629 Female, age 94, right hemisphere 39.3
2199 Male, age 80, right hemisphere 37.6
2394 Male, age 61, left hemisphere 37.4
2059 Female, age 85, both hemispheres 37.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.3
Samples: 246

Max nTPM: 54.6
Min nTPM: 23.7
Std nTPM: 5.2
Median nTPM: 34.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 54.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 49.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 49.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 47.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 47.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.8
Samples: 246

Max nTPM: 61.6
Min nTPM: 21.8
Std nTPM: 6.3
Median nTPM: 34.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 61.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 61.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 57.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 56.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 54.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 53.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 52.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 49.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 47.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 47.0
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Brain - Putamen (basal ganglia)
Average nTPM: 35.6
Samples: 205

Max nTPM: 76.6
Min nTPM: 24.1
Std nTPM: 5.9
Median nTPM: 35.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 76.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 58.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 52.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 50.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 48.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 46.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 46.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 45.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 45.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 45.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.8
FF:10164-103B2 76 years, female 75.8
Globus pallidus
Scaled Tags Per Million: 95.9
FF:10161-103A8 76 years, female 103.5
FF:10175-103C4 60 years, female 88.4
Nucleus accumbens
Scaled Tags Per Million: 101.1
FF:10037-101F1 23-56 years, mixed 101.1
Putamen
Scaled Tags Per Million: 111.3
FF:10176-103C5 60 years, female 111.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 151.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 146.9
Samples: 4

Max nTPM: 154.5
Min nTPM: 136.8
Sample A Male 142.9
Sample B Male 136.8
Sample C Female 153.3
Sample D Female 154.5
Septum
nTPM: 151.4
Samples: 4

Max nTPM: 162.4
Min nTPM: 127.3
Sample A Male 127.3
Sample B Male 162.3
Sample C Female 162.4
Sample D Female 153.6
Ventral forebrain
nTPM: 134.5
Samples: 4

Max nTPM: 150.7
Min nTPM: 124.9
Sample A Male 124.9
Sample B Male 134.9
Sample C Female 150.7
Sample D Female 127.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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