MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:40.4 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Mouse:134.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
1870 Female, age 42, unknown 44.4
2019 Male, age 18, unknown 43.4
2411 Female, age 72, unknown 43.4
1833 Male, age 53, unknown 43.3
1830 Male, age 51, unknown 42.2
2586 Male, age 75, left hemisphere 39.5
2219 Male, age 76, both hemispheres 38.9
1827 Male, age 72, unknown 38.8
2666 Male, age 74, left hemisphere 37.8
2828 Female, age 72, unknown 37.4
Dorsal raphe nucleus
nTPM: 42.3
2750 Male, age 76, both hemispheres 45.2
1828 Male, age 53, unknown 42.8
2298 Female, age 72, unknown 42.6
2016 Female, age 72, unknown 40.6
2047 Male, age 72, unknown 40.4
Inferior colliculus
nTPM: 40.0
2097 Female, age 72, unknown 41.7
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 39.7
2849 Male, age 72, unknown 38.5
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 43.8
2338 Male, age 61, both hemispheres 46.8
2334 Male, age 80, both hemispheres 44.6
1921 Female, age 85, both hemispheres 40.0
Periaquaductal grey, anterior
nTPM: 40.6
2502 Female, age 75, unknown 42.6
1947 Male, age 18, unknown 42.0
1795 Male, age 51, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 39.9
2850 Male, age 76, both hemispheres 43.0
2464 Female, age 72, unknown 39.9
1840 Male, age 53, unknown 39.8
1831 Male, age 72, unknown 36.9
Periaquaductal grey, lateral
nTPM: 39.7
2272 Male, age 74, both hemispheres 41.9
2140 Male, age 76, both hemispheres 39.6
2053 Male, age 18, unknown 37.8
Pretectal area
nTPM: 41.1
1815 Male, age 53, unknown 43.5
1817 Female, age 42, unknown 43.5
2273 Male, age 74, both hemispheres 43.1
2224 Female, age 72, unknown 42.0
2007 Male, age 72, unknown 41.9
1944 Female, age 72, unknown 41.7
1816 Male, age 51, unknown 41.1
2825 Male, age 18, unknown 39.4
2667 Female, age 75, unknown 39.1
2316 Male, age 76, right hemisphere 38.7
2407 Male, age 75, both hemispheres 37.6
Red nucleus
nTPM: 41.3
1821 Female, age 72, unknown 45.8
1954 Female, age 42, unknown 43.1
1865 Male, age 51, unknown 43.0
1904 Male, age 53, unknown 42.1
2785 Male, age 18, unknown 41.6
2227 Male, age 72, unknown 41.5
2584 Male, age 75, left hemisphere 41.1
2503 Female, age 72, unknown 40.9
2725 Female, age 75, unknown 40.4
2769 Male, age 72, unknown 40.3
2823 Male, age 76, right hemisphere 39.6
2588 Male, age 74, left hemisphere 35.7
Substantia nigra
nTPM: 44.7
2241 Male, age 72, unknown 54.1
1916 Female, age 42, unknown 48.8
1851 Male, age 51, unknown 47.1
2409 Female, age 72, unknown 44.1
2699 Male, age 18, unknown 43.9
1941 Male, age 53, unknown 43.7
1889 Female, age 72, unknown 43.3
2590 Female, age 75, unknown 42.2
2583 Male, age 75, right hemisphere 39.8
2665 Male, age 74, both hemispheres 39.7
Superior colliculus
nTPM: 40.0
2668 Female, age 75, unknown 42.6
1913 Female, age 42, unknown 41.6
2087 Female, age 72, unknown 41.2
2587 Male, age 74, left hemisphere 41.1
1995 Male, age 72, unknown 40.8
1839 Male, age 51, unknown 40.1
2261 Male, age 18, unknown 39.7
1895 Male, age 76, right hemisphere 38.6
1796 Male, age 53, unknown 37.4
2664 Male, age 75, both hemispheres 36.5
Ventral tegmental area
nTPM: 43.9
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 45.7
2218 Male, age 76, both hemispheres 45.5
1915 Female, age 42, unknown 43.9
1942 Male, age 51, unknown 41.3
2021 Male, age 53, unknown 41.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.4
Samples: 139

Max nTPM: 64.5
Min nTPM: 23.7
Std nTPM: 7.7
Median nTPM: 39.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 61.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 58.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 53.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 53.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 52.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.9
FF:10158-103A5 76 years, female 96.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.1
Samples: 4

Max nTPM: 140.2
Min nTPM: 128.5
Sample A Male 133.7
Sample B Male 133.8
Sample C Female 140.2
Sample D Female 128.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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