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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1564.4 nTPM
HPA:1564.4 nTPM
GTEx:480.9 nTPM
FANTOM5:1301.5 Scaled Tags Per Million
Pig:854.8 nTPM
Mouse:1799.9 nTPM
Allen mouse:8.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1564.4
Sample id Sample description nTPM
Amygdala
nTPM: 1437.2
1987 Female, age 91, left hemisphere 1570.4
2814 Male, age 76, right hemisphere 1478.8
2514 Male, age 75, right hemisphere 1421.2
2517 Female, age 94, left hemisphere 1393.1
2695 Female, age 67, right hemisphere 1322.6
Basal amygdala
nTPM: 1432.0
2243 Female, age 91, right hemisphere 1577.7
2609 Male, age 75, right hemisphere 1460.0
2685 Female, age 94, left hemisphere 1443.9
2110 Male, age 80, left hemisphere 1441.3
1955 Male, age 76, both hemispheres 1396.3
2827 Female, age 67, right hemisphere 1272.9
Central amygdala
nTPM: 1433.9
2701 Female, age 91, right hemisphere 1489.1
2826 Female, age 94, left hemisphere 1467.0
2515 Male, age 75, right hemisphere 1423.0
1905 Male, age 76, both hemispheres 1420.9
2239 Male, age 80, left hemisphere 1369.7
Corticomedial amygdala
nTPM: 1440.4
2242 Female, age 91, right hemisphere 1592.4
2829 Male, age 80, left hemisphere 1483.9
2428 Male, age 75, right hemisphere 1460.8
2240 Male, age 76, both hemispheres 1401.5
2429 Female, age 94, left hemisphere 1375.9
2535 Female, age 67, right hemisphere 1327.7
Lateral amygdala
nTPM: 1377.7
2534 Female, age 94, left hemisphere 1499.8
1883 Male, age 76, both hemispheres 1476.5
2516 Male, age 75, right hemisphere 1409.8
2255 Female, age 91, right hemisphere 1380.8
2256 Male, age 80, left hemisphere 1267.3
2830 Female, age 67, right hemisphere 1232.2
Stria terminalis, bed nucleus
nTPM: 1564.4
2201 Male, age 74, unknown 1678.6
1974 Female, age 91, both hemispheres 1601.2
2486 Female, age 94, both hemispheres 1413.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 480.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 480.9
Samples: 152

Max nTPM: 1186.6
Min nTPM: 188.5
Std nTPM: 188.5
Median nTPM: 434.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1186.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1042.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 950.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 943.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 845.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 818.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 815.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 805.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 796.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 793.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 788.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 778.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 772.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 771.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 769.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 750.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 749.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 745.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 743.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 730.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 720.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 691.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 686.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 677.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 670.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 665.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 651.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 639.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 634.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 630.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 613.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 611.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 607.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 606.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 604.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 598.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 595.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 594.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 593.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 593.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 590.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 589.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 588.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 587.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 586.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 578.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 574.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 573.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 570.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 569.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 561.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 545.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 541.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 541.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 537.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 535.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 532.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 532.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 528.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 521.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 515.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 514.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 510.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 507.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 505.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 495.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 484.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 473.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 470.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 467.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 460.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 454.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 452.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 438.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 436.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 434.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 433.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 430.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 429.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 420.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 413.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 413.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 412.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 399.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 398.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 397.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 397.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 393.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 392.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 392.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 390.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 388.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 386.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 384.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 381.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 378.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 377.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 376.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 376.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 375.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 368.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 368.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 367.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 366.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 365.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 360.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 358.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 356.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 356.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 349.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 349.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 348.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 346.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 345.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 343.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 337.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 336.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 336.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 330.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 323.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 323.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 319.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 309.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 309.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 308.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 307.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 303.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 301.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 294.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 286.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 282.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 280.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 279.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 278.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 272.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 271.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 269.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 265.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 259.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 255.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 255.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 251.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 245.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 238.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 233.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 225.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 219.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 216.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 202.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 201.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 193.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 188.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1301.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1301.5
FF:10151-102I7 76 years, female 1301.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 854.8
Pig sample Sample description nTPM
Amygdala
nTPM: 854.8
Samples: 4

Max nTPM: 1240.8
Min nTPM: 644.9
Sample A Female 1240.8
Sample B Female 659.0
Sample C Male 644.9
Sample D Male 874.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1799.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1799.9
Samples: 4

Max nTPM: 1868.2
Min nTPM: 1710.3
Sample A Male 1868.2
Sample B Male 1710.3
Sample C Female 1821.1
Sample D Female 1800.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.7
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 17.4
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 13.7
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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