MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1949.4 nTPM
HPA:1949.4 nTPM
GTEx:434.4 nTPM
FANTOM5:561.0 Scaled Tags Per Million
Pig:1123.1 nTPM
Mouse:2313.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1949.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1457.9
2411 Female, age 72, unknown 1612.5
1870 Female, age 42, unknown 1546.7
1827 Male, age 72, unknown 1531.1
2219 Male, age 76, both hemispheres 1523.2
1833 Male, age 53, unknown 1473.7
2586 Male, age 75, left hemisphere 1414.8
1830 Male, age 51, unknown 1405.1
2666 Male, age 74, left hemisphere 1403.6
2019 Male, age 18, unknown 1343.1
2828 Female, age 72, unknown 1325.4
Dorsal raphe nucleus
nTPM: 1696.2
2047 Male, age 72, unknown 1961.0
2298 Female, age 72, unknown 1917.0
2750 Male, age 76, both hemispheres 1654.4
1828 Male, age 53, unknown 1517.6
2016 Female, age 72, unknown 1431.1
Inferior colliculus
nTPM: 1619.2
1848 Female, age 42, unknown 1725.1
2097 Female, age 72, unknown 1618.3
2849 Male, age 72, unknown 1615.2
1890 Male, age 53, unknown 1518.0
Median raphe nucleus
nTPM: 1949.4
2220 Male, age 76, midline 1949.4
Pedunculopontine tegmental nucleus
nTPM: 1579.7
2334 Male, age 80, both hemispheres 1680.7
1921 Female, age 85, both hemispheres 1619.8
2338 Male, age 61, both hemispheres 1438.7
Periaquaductal grey, anterior
nTPM: 1476.5
1795 Male, age 51, unknown 1517.8
2502 Female, age 75, unknown 1459.8
1947 Male, age 18, unknown 1451.8
Periaquaductal grey, dorsal
nTPM: 1515.0
1840 Male, age 53, unknown 1677.6
2850 Male, age 76, both hemispheres 1511.8
2464 Female, age 72, unknown 1500.5
1831 Male, age 72, unknown 1370.1
Periaquaductal grey, lateral
nTPM: 1454.9
2272 Male, age 74, both hemispheres 1463.7
2053 Male, age 18, unknown 1462.9
2140 Male, age 76, both hemispheres 1438.2
Pretectal area
nTPM: 1460.3
2224 Female, age 72, unknown 1673.8
1944 Female, age 72, unknown 1541.4
2007 Male, age 72, unknown 1528.9
2825 Male, age 18, unknown 1510.8
2667 Female, age 75, unknown 1440.5
1817 Female, age 42, unknown 1439.4
1816 Male, age 51, unknown 1427.5
2316 Male, age 76, right hemisphere 1416.8
2273 Male, age 74, both hemispheres 1413.2
1815 Male, age 53, unknown 1361.4
2407 Male, age 75, both hemispheres 1309.9
Red nucleus
nTPM: 1348.9
1821 Female, age 72, unknown 1434.2
2769 Male, age 72, unknown 1385.2
2227 Male, age 72, unknown 1384.4
2785 Male, age 18, unknown 1376.8
1954 Female, age 42, unknown 1366.5
2503 Female, age 72, unknown 1350.4
2725 Female, age 75, unknown 1344.1
2584 Male, age 75, left hemisphere 1337.2
2588 Male, age 74, left hemisphere 1323.8
1904 Male, age 53, unknown 1320.0
1865 Male, age 51, unknown 1304.0
2823 Male, age 76, right hemisphere 1260.3
Substantia nigra
nTPM: 1461.8
1889 Female, age 72, unknown 1575.2
1916 Female, age 42, unknown 1544.0
1941 Male, age 53, unknown 1537.2
2699 Male, age 18, unknown 1488.2
2665 Male, age 74, both hemispheres 1477.4
1851 Male, age 51, unknown 1472.3
2590 Female, age 75, unknown 1422.2
2241 Male, age 72, unknown 1409.1
2583 Male, age 75, right hemisphere 1348.1
2409 Female, age 72, unknown 1344.1
Superior colliculus
nTPM: 1416.0
1895 Male, age 76, right hemisphere 1545.0
1796 Male, age 53, unknown 1518.5
1839 Male, age 51, unknown 1507.7
2668 Female, age 75, unknown 1466.6
2087 Female, age 72, unknown 1428.6
2587 Male, age 74, left hemisphere 1423.3
2261 Male, age 18, unknown 1415.5
2664 Male, age 75, both hemispheres 1375.1
1913 Female, age 42, unknown 1241.0
1995 Male, age 72, unknown 1238.9
Ventral tegmental area
nTPM: 1508.3
2410 Female, age 72, unknown 1572.6
1915 Female, age 42, unknown 1564.2
2218 Male, age 76, both hemispheres 1516.6
2021 Male, age 53, unknown 1488.0
1942 Male, age 51, unknown 1475.0
2223 Female, age 72, unknown 1433.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 434.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 434.4
Samples: 139

Max nTPM: 1663.6
Min nTPM: 164.9
Std nTPM: 213.8
Median nTPM: 365.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1663.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1360.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 979.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 919.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 886.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 867.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 855.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 851.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 807.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 763.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 763.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 561.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 561.0
FF:10158-103A5 76 years, female 561.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 1123.1
Pig sample Sample description nTPM
Midbrain
nTPM: 1115.3
Samples: 4

Max nTPM: 1311.1
Min nTPM: 945.6
Sample A Female 1033.9
Sample B Female 945.6
Sample C Male 1170.6
Sample D Male 1311.1
Periaqueductal gray
nTPM: 1063.5
Samples: 3

Max nTPM: 1411.4
Min nTPM: 854.3
Sample B Female 924.7
Sample C Male 1411.4
Sample D Male 854.3
Substantia nigra
nTPM: 1034.3
Samples: 4

Max nTPM: 1307.1
Min nTPM: 758.1
Sample A Female 1222.7
Sample B Female 849.3
Sample C Male 1307.1
Sample D Male 758.1
Superior colliculi
nTPM: 1123.1
Samples: 4

Max nTPM: 1360.2
Min nTPM: 875.8
Sample A Female 1205.0
Sample B Female 875.8
Sample C Male 1360.2
Sample D Male 1051.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2313.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2313.6
Samples: 4

Max nTPM: 2363.4
Min nTPM: 2254.0
Sample A Male 2254.0
Sample B Male 2363.4
Sample C Female 2281.1
Sample D Female 2355.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 17.3
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 12.7
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0
511 Sense, RPS_Baylor_36998, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.