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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1882.0 nTPM
HPA:1882.0 nTPM
FANTOM5:544.7 Scaled Tags Per Million
Pig:1210.3 nTPM
Mouse:2051.8 nTPM
Allen mouse:7.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 1882.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1358.1
2032 Female, age 42, unknown 1403.5
2396 Male, age 61, right hemisphere 1345.8
2497 Male, age 66, unknown 1325.1
Centromedial thalamic nucleus
nTPM: 1288.0
2401 Male, age 76, right hemisphere 1450.4
2279 Female, age 85, left hemisphere 1125.7
Habenula
nTPM: 1680.0
2203 Male, age 61, left hemisphere 1980.3
1957 Male, age 80, both hemispheres 1629.4
2276 Male, age 66, unknown 1561.8
2252 Male, age 62, unknown 1548.6
Lateral geniculate body
nTPM: 1465.0
2106 Female, age 67, right hemisphere 1808.9
1953 Male, age 62, unknown 1618.5
2035 Female, age 72, unknown 1463.5
2399 Male, age 61, left hemisphere 1411.7
2857 Male, age 74, right hemisphere 1392.6
2841 Male, age 80, both hemispheres 1358.0
2659 Male, age 66, unknown 1336.1
2575 Female, age 94, right hemisphere 1330.5
Lateral thalamic nuclei
nTPM: 1403.0
1903 Male, age 76, left hemisphere 1552.8
2765 Female, age 67, both hemispheres 1445.4
2577 Male, age 74, both hemispheres 1412.7
2573 Female, age 94, left hemisphere 1334.4
2661 Female, age 72, unknown 1269.8
Medial dorsal thalamic nucleus
nTPM: 1498.7
2498 Male, age 66, unknown 1800.1
1971 Male, age 61, right hemisphere 1580.5
2039 Female, age 72, unknown 1577.3
1810 Male, age 48, unknown 1533.7
1859 Male, age 76, both hemispheres 1528.6
2492 Male, age 75, right hemisphere 1516.7
2026 Male, age 62, unknown 1516.1
2572 Female, age 94, right hemisphere 1471.0
2283 Male, age 80, right hemisphere 1464.3
2576 Male, age 74, both hemispheres 1445.5
1930 Female, age 42, unknown 1425.2
2402 Female, age 67, both hemispheres 1388.8
2660 Female, age 72, unknown 1235.8
Medial geniculate body
nTPM: 1391.9
1811 Female, age 42, unknown 1443.0
2650 Female, age 94, left hemisphere 1439.4
2049 Male, age 76, both hemispheres 1396.3
2207 Male, age 80, right hemisphere 1394.1
2657 Male, age 74, right hemisphere 1379.2
2571 Male, age 75, right hemisphere 1377.6
2217 Female, age 72, unknown 1313.3
Nucleus reuniens
nTPM: 1483.5
2212 Female, age 67, left hemisphere 1715.7
2205 Male, age 80, left hemisphere 1490.2
2210 Female, age 85, left hemisphere 1244.7
Nucleus rhomboideus
nTPM: 1383.7
2206 Male, age 80, both hemispheres 1584.9
2213 Female, age 67, left hemisphere 1324.4
2280 Female, age 85, left hemisphere 1242.0
Posterior thalamic nucleus
nTPM: 1452.6
2649 Female, age 94, both hemispheres 1579.4
2266 Male, age 76, right hemisphere 1434.4
2655 Male, age 74, right hemisphere 1409.2
2495 Female, age 67, right hemisphere 1387.4
Pulvinar
nTPM: 1436.5
1972 Male, age 62, unknown 1680.2
1932 Male, age 80, right hemisphere 1466.6
2496 Female, age 67, right hemisphere 1458.5
1929 Male, age 48, unknown 1440.3
2214 Male, age 76, right hemisphere 1417.3
1899 Female, age 42, unknown 1391.2
2398 Male, age 61, left hemisphere 1388.8
2724 Male, age 74, right hemisphere 1386.4
2499 Male, age 66, unknown 1382.6
2582 Female, age 72, unknown 1353.1
Subthalamic nucleus
nTPM: 1596.5
2406 Female, age 72, unknown 1916.7
2779 Female, age 42, unknown 1662.1
2124 Male, age 62, unknown 1648.5
2275 Male, age 66, unknown 1589.1
2658 Male, age 74, both hemispheres 1583.5
2282 Male, age 61, both hemispheres 1499.0
2056 Female, age 72, unknown 1463.8
2216 Male, age 48, unknown 1409.0
Ventral posterolateral thalamic nucleus
nTPM: 1397.5
2740 Male, age 76, right hemisphere 1534.3
2197 Male, age 80, both hemispheres 1467.6
2578 Male, age 74, both hemispheres 1437.9
2570 Male, age 75, right hemisphere 1388.9
2397 Male, age 61, right hemisphere 1360.8
2581 Female, age 72, unknown 1195.3
Ventral posteromedial thalamic nucleus
nTPM: 1443.2
2202 Male, age 61, left hemisphere 1501.6
2653 Male, age 74, both hemispheres 1498.4
2758 Male, age 80, both hemispheres 1465.4
2281 Male, age 75, right hemisphere 1422.0
2127 Male, age 76, right hemisphere 1328.6
Ventral thalamic nuclei
nTPM: 1425.8
1845 Male, age 48, unknown 1527.0
1912 Female, age 42, unknown 1525.7
1860 Male, age 76, both hemispheres 1515.4
2291 Female, age 72, unknown 1448.1
2285 Male, age 62, unknown 1423.4
2652 Male, age 74, left hemisphere 1402.2
2204 Male, age 80, both hemispheres 1384.0
2580 Male, age 66, unknown 1341.2
2858 Female, age 72, unknown 1265.4
Ventromedial nucleus
nTPM: 1882.0
1982 Female, age 72, unknown 1893.5
1822 Female, age 42, unknown 1870.6
Zona incerta
nTPM: 1395.7
2208 Male, age 80, right hemisphere 1455.6
2822 Male, age 74, right hemisphere 1433.2
2403 Male, age 62, unknown 1396.8
2215 Male, age 66, unknown 1386.1
2663 Female, age 72, unknown 1306.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 544.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 544.7
FF:10154-103A1 76 years, female 544.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1210.3
Pig sample Sample description nTPM
Thalamus
nTPM: 1210.3
Samples: 4

Max nTPM: 1604.1
Min nTPM: 966.3
Sample A Female 1604.1
Sample B Female 966.3
Sample C Male 1283.9
Sample D Male 987.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2051.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 2051.8
Samples: 4

Max nTPM: 2229.9
Min nTPM: 1863.5
Sample A Male 1863.5
Sample B Male 2229.9
Sample C Female 1941.4
Sample D Female 2172.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.1
509 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 14.1
510 Antisense, RP_040507_01_H03, Mouse strain C57BL/6J (56 days, male) 12.2
70230813 Antisense, RP_050524_04_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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