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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:527.3 nTPM
HPA:527.3 nTPM
GTEx:181.8 nTPM
FANTOM5:690.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glandular cells HighHighLowLow









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 527.3
overview
Male, age 65
Small intestine sample 232
nTPM: 549.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 500.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 538.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 520.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 181.8
Samples: 187

Max nTPM: 365.7
Min nTPM: 103.6
Std nTPM: 49.8
Median nTPM: 168.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 365.7
GTEX-1192X-2526-SM-59868 50-59 years, male 347.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 344.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 343.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 328.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 326.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 296.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 295.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 286.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 281.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 277.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 277.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 277.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 275.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 264.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 256.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 253.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 251.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 250.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 242.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 242.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 241.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 241.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 240.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 237.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 237.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 234.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 233.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 232.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 229.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 228.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 227.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 226.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 223.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 216.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 215.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 214.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 213.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 212.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 210.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 209.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 208.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 207.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 207.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 207.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 204.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 203.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 199.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 199.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 198.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 197.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 196.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 195.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 194.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 193.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 192.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 192.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 191.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 190.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 190.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 190.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 189.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 189.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 189.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 188.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 187.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 186.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 186.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 185.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 182.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 182.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 181.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 181.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 179.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 178.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 178.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 177.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 177.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 176.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 175.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 173.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 173.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 172.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 171.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 171.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 171.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 170.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 170.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 169.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 169.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 169.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 169.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 168.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 168.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 167.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 167.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 166.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 166.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 165.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 165.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 164.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 163.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 163.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 163.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 162.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 162.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 161.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 160.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 159.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 159.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 159.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 158.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 158.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 157.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 157.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 157.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 157.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 156.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 155.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 155.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 155.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 155.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 154.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 154.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 154.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 154.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 154.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 153.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 153.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 153.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 153.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 152.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 152.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 152.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 152.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 152.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 151.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 151.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 151.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 151.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 150.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 150.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 149.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 149.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 149.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 148.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 147.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 146.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 146.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 146.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 145.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 144.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 144.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 144.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 142.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 142.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 142.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 140.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 139.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 139.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 139.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 136.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 136.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 135.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 134.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 134.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 133.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 133.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 133.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 132.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 131.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 131.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 130.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 128.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 127.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 127.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 125.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 125.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 124.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 121.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 119.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 118.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 113.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 111.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 108.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 106.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 103.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 690.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 690.6
FF:10024-101D6 15,40,85 years, mixed 690.6

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