MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:965.9 nTPM
HPA:965.9 nTPM
GTEx:783.8 nTPM
FANTOM5:722.2 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 965.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 913.2
2019 Male, age 18, unknown 997.3
2411 Female, age 72, unknown 955.2
1827 Male, age 72, unknown 938.4
2828 Female, age 72, unknown 926.4
2586 Male, age 75, left hemisphere 917.2
1870 Female, age 42, unknown 916.1
1833 Male, age 53, unknown 883.6
1830 Male, age 51, unknown 881.5
2219 Male, age 76, both hemispheres 858.3
2666 Male, age 74, left hemisphere 858.2
Dorsal raphe nucleus
nTPM: 915.7
2298 Female, age 72, unknown 972.1
2750 Male, age 76, both hemispheres 934.2
2047 Male, age 72, unknown 898.4
1828 Male, age 53, unknown 893.6
2016 Female, age 72, unknown 880.3
Inferior colliculus
nTPM: 907.3
2097 Female, age 72, unknown 958.2
1848 Female, age 42, unknown 904.7
1890 Male, age 53, unknown 900.4
2849 Male, age 72, unknown 865.7
Median raphe nucleus
nTPM: 928.9
2220 Male, age 76, midline 928.9
Pedunculopontine tegmental nucleus
nTPM: 901.2
1921 Female, age 85, both hemispheres 930.7
2334 Male, age 80, both hemispheres 921.4
2338 Male, age 61, both hemispheres 851.6
Periaquaductal grey, anterior
nTPM: 919.4
2502 Female, age 75, unknown 945.2
1795 Male, age 51, unknown 916.3
1947 Male, age 18, unknown 896.8
Periaquaductal grey, dorsal
nTPM: 879.5
2464 Female, age 72, unknown 906.9
1840 Male, age 53, unknown 876.4
1831 Male, age 72, unknown 873.7
2850 Male, age 76, both hemispheres 861.2
Periaquaductal grey, lateral
nTPM: 883.2
2272 Male, age 74, both hemispheres 902.8
2053 Male, age 18, unknown 891.6
2140 Male, age 76, both hemispheres 855.3
Pretectal area
nTPM: 965.9
1817 Female, age 42, unknown 1051.3
2007 Male, age 72, unknown 1042.4
1816 Male, age 51, unknown 1031.5
1944 Female, age 72, unknown 1020.7
1815 Male, age 53, unknown 1000.5
2667 Female, age 75, unknown 975.8
2273 Male, age 74, both hemispheres 946.2
2224 Female, age 72, unknown 918.7
2316 Male, age 76, right hemisphere 887.4
2407 Male, age 75, both hemispheres 877.2
2825 Male, age 18, unknown 873.1
Red nucleus
nTPM: 926.0
2785 Male, age 18, unknown 990.2
1821 Female, age 72, unknown 979.2
2503 Female, age 72, unknown 963.4
1954 Female, age 42, unknown 925.5
2823 Male, age 76, right hemisphere 918.3
2725 Female, age 75, unknown 916.0
1865 Male, age 51, unknown 915.1
2227 Male, age 72, unknown 914.4
1904 Male, age 53, unknown 908.1
2769 Male, age 72, unknown 907.4
2588 Male, age 74, left hemisphere 889.1
2584 Male, age 75, left hemisphere 885.1
Substantia nigra
nTPM: 905.1
1889 Female, age 72, unknown 976.2
1941 Male, age 53, unknown 939.2
1916 Female, age 42, unknown 931.8
1851 Male, age 51, unknown 920.1
2241 Male, age 72, unknown 905.2
2583 Male, age 75, right hemisphere 898.7
2409 Female, age 72, unknown 883.9
2590 Female, age 75, unknown 880.2
2665 Male, age 74, both hemispheres 866.5
2699 Male, age 18, unknown 848.8
Superior colliculus
nTPM: 919.0
2087 Female, age 72, unknown 977.4
2261 Male, age 18, unknown 946.7
1796 Male, age 53, unknown 936.8
1995 Male, age 72, unknown 916.7
1913 Female, age 42, unknown 913.0
2587 Male, age 74, left hemisphere 911.9
2668 Female, age 75, unknown 911.7
1839 Male, age 51, unknown 895.8
1895 Male, age 76, right hemisphere 893.2
2664 Male, age 75, both hemispheres 886.8
Ventral tegmental area
nTPM: 909.2
2410 Female, age 72, unknown 930.8
2223 Female, age 72, unknown 921.5
1915 Female, age 42, unknown 916.7
1942 Male, age 51, unknown 900.1
2021 Male, age 53, unknown 895.8
2218 Male, age 76, both hemispheres 890.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 783.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 783.8
Samples: 139

Max nTPM: 1389.4
Min nTPM: 435.1
Std nTPM: 156.9
Median nTPM: 755.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1389.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1255.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1251.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1225.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1201.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1127.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1109.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1108.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1095.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1056.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1046.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 722.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 722.2
FF:10158-103A5 76 years, female 722.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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