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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1006.6 nTPM
HPA:1006.6 nTPM
GTEx:813.3 nTPM
FANTOM5:742.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1006.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 970.7
1981 Female, age 72, midline 1060.5
2194 Female, age 79, both hemispheres 976.2
2048 Male, age 55, midline 951.1
2816 Male, age 47, midline 933.3
2565 Male, age 75, midline 932.3
Cervical spinal cord, dorsal horn
nTPM: 1006.6
2296 Male, age 66, both hemispheres 1111.4
2173 Female, age 72, unknown 1101.4
2069 Male, age 47, both hemispheres 1047.4
2297 Male, age 75, both hemispheres 948.1
1877 Male, age 55, unknown 939.9
2721 Male, age 90, both hemispheres 891.2
Cervical spinal cord, ventral horn
nTPM: 987.0
2098 Female, age 72, unknown 1053.3
2480 Male, age 75, both hemispheres 1025.1
2295 Male, age 66, both hemispheres 1014.5
2809 Male, age 90, both hemispheres 972.4
2068 Male, age 55, unknown 953.6
2820 Female, age 79, both hemispheres 903.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 813.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 813.3
Samples: 159

Max nTPM: 1353.6
Min nTPM: 505.9
Std nTPM: 165.5
Median nTPM: 802.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1353.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1241.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1241.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1227.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1206.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1178.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1154.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1143.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1113.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1106.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1099.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1081.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1077.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1066.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1040.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1020.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1017.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1014.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1012.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1006.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 989.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 986.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 980.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 962.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 962.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 959.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 955.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 953.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 952.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 949.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 940.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 939.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 939.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 938.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 930.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 929.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 926.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 925.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 916.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 914.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 910.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 909.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 904.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 904.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 899.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 897.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 887.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 883.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 872.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 872.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 870.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 869.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 857.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 856.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 855.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 855.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 853.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 850.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 848.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 846.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 844.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 843.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 838.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 838.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 827.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 825.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 821.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 821.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 819.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 819.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 817.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 811.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 810.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 809.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 809.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 807.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 807.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 806.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 802.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 802.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 801.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 799.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 798.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 798.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 794.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 791.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 788.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 782.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 781.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 781.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 777.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 774.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 774.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 774.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 771.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 768.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 766.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 762.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 757.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 755.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 755.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 746.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 745.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 745.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 744.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 742.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 737.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 732.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 730.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 725.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 724.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 718.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 717.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 712.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 712.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 706.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 705.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 701.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 698.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 692.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 691.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 690.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 687.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 676.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 676.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 670.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 669.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 668.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 666.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 659.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 658.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 655.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 651.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 648.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 645.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 638.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 638.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 634.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 631.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 625.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 617.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 614.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 603.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 597.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 596.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 595.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 590.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 587.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 583.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 574.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 568.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 562.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 549.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 546.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 540.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 533.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 519.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 508.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 505.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 742.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 742.1
FF:10181-103D1 60 years, female 944.4
FF:10159-103A6 76 years, female 539.8

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