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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:347.4 nTPM
HPA:347.4 nTPM
GTEx:346.5 nTPM
FANTOM5:57.1 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:127.0 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 347.4
Sample id Sample description nTPM
Amygdala
nTPM: 347.4
2814 Male, age 76, right hemisphere 363.9
2695 Female, age 67, right hemisphere 349.1
2514 Male, age 75, right hemisphere 344.6
2517 Female, age 94, left hemisphere 340.9
1987 Female, age 91, left hemisphere 338.2
Basal amygdala
nTPM: 331.9
2110 Male, age 80, left hemisphere 338.1
2609 Male, age 75, right hemisphere 337.7
2685 Female, age 94, left hemisphere 334.3
1955 Male, age 76, both hemispheres 331.8
2827 Female, age 67, right hemisphere 327.3
2243 Female, age 91, right hemisphere 322.5
Central amygdala
nTPM: 343.4
2826 Female, age 94, left hemisphere 361.5
1905 Male, age 76, both hemispheres 359.6
2515 Male, age 75, right hemisphere 341.7
2239 Male, age 80, left hemisphere 329.8
2701 Female, age 91, right hemisphere 324.5
Corticomedial amygdala
nTPM: 331.1
2428 Male, age 75, right hemisphere 347.2
2829 Male, age 80, left hemisphere 336.1
2429 Female, age 94, left hemisphere 331.0
2240 Male, age 76, both hemispheres 327.4
2242 Female, age 91, right hemisphere 323.2
2535 Female, age 67, right hemisphere 321.6
Lateral amygdala
nTPM: 339.2
2534 Female, age 94, left hemisphere 357.2
1883 Male, age 76, both hemispheres 352.9
2516 Male, age 75, right hemisphere 350.6
2830 Female, age 67, right hemisphere 329.4
2255 Female, age 91, right hemisphere 322.7
2256 Male, age 80, left hemisphere 322.4
Stria terminalis, bed nucleus
nTPM: 333.8
1974 Female, age 91, both hemispheres 346.3
2486 Female, age 94, both hemispheres 332.3
2201 Male, age 74, unknown 322.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 346.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 346.5
Samples: 152

Max nTPM: 1578.6
Min nTPM: 153.9
Std nTPM: 157.7
Median nTPM: 309.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1578.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 932.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 881.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 793.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 701.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 680.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 665.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 643.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 564.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 559.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 559.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 500.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 494.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 486.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 485.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 472.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 459.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 452.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 440.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 438.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 437.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 431.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 426.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 420.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 417.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 416.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 414.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 407.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 399.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 398.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 394.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 393.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 389.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 386.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 380.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 377.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 375.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 374.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 370.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 370.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 369.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 364.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 358.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 357.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 354.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 353.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 351.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 351.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 351.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 350.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 349.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 346.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 345.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 345.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 342.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 342.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 342.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 340.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 336.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 336.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 334.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 332.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 330.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 330.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 329.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 329.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 329.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 323.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 323.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 322.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 321.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 321.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 319.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 311.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 309.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 308.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 307.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 307.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 306.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 305.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 305.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 304.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 303.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 302.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 298.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 298.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 295.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 291.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 290.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 289.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 289.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 288.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 287.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 286.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 286.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 285.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 284.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 283.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 279.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 277.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 277.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 273.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 272.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 268.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 265.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 264.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 263.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 263.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 263.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 263.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 262.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 262.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 259.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 259.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 258.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 258.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 257.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 257.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 255.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 254.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 254.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 252.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 252.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 251.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 247.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 246.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 245.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 245.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 244.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 243.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 241.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 241.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 238.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 233.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 232.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 232.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 232.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 232.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 231.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 231.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 228.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 226.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 215.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 205.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 202.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 202.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 191.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 188.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 182.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 153.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 57.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 57.1
FF:10151-102I7 76 years, female 57.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.6
Pig sample Sample description nTPM
Amygdala
nTPM: 18.6
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.6
Sample A Female 19.7
Sample B Female 18.2
Sample C Male 19.0
Sample D Male 17.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 127.0
Samples: 4

Max nTPM: 167.6
Min nTPM: 103.7
Sample A Male 130.9
Sample B Male 105.8
Sample C Female 167.6
Sample D Female 103.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
70429309 Antisense, RP_050614_01_D09, Mouse strain C57BL/6J (56 days, male) 0.8

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