MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:355.8 nTPM
HPA:355.8 nTPM
GTEx:369.2 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:66.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 355.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 345.4
2019 Male, age 18, unknown 371.6
2411 Female, age 72, unknown 353.9
1827 Male, age 72, unknown 351.8
1870 Female, age 42, unknown 347.9
2828 Female, age 72, unknown 344.7
2586 Male, age 75, left hemisphere 342.1
2666 Male, age 74, left hemisphere 338.1
2219 Male, age 76, both hemispheres 336.3
1830 Male, age 51, unknown 333.6
1833 Male, age 53, unknown 333.6
Dorsal raphe nucleus
nTPM: 346.5
2298 Female, age 72, unknown 363.1
2750 Male, age 76, both hemispheres 347.8
1828 Male, age 53, unknown 346.6
2047 Male, age 72, unknown 340.1
2016 Female, age 72, unknown 334.7
Inferior colliculus
nTPM: 346.4
2097 Female, age 72, unknown 365.8
1890 Male, age 53, unknown 358.4
1848 Female, age 42, unknown 335.8
2849 Male, age 72, unknown 325.7
Median raphe nucleus
nTPM: 337.8
2220 Male, age 76, midline 337.8
Pedunculopontine tegmental nucleus
nTPM: 346.9
2334 Male, age 80, both hemispheres 350.6
1921 Female, age 85, both hemispheres 348.5
2338 Male, age 61, both hemispheres 341.4
Periaquaductal grey, anterior
nTPM: 344.2
2502 Female, age 75, unknown 346.8
1947 Male, age 18, unknown 346.1
1795 Male, age 51, unknown 339.8
Periaquaductal grey, dorsal
nTPM: 333.2
1831 Male, age 72, unknown 336.8
2464 Female, age 72, unknown 335.4
1840 Male, age 53, unknown 335.1
2850 Male, age 76, both hemispheres 325.5
Periaquaductal grey, lateral
nTPM: 329.5
2053 Male, age 18, unknown 331.4
2272 Male, age 74, both hemispheres 330.0
2140 Male, age 76, both hemispheres 327.1
Pretectal area
nTPM: 353.8
2007 Male, age 72, unknown 383.2
1816 Male, age 51, unknown 373.2
1817 Female, age 42, unknown 368.3
1944 Female, age 72, unknown 364.0
1815 Male, age 53, unknown 358.1
2667 Female, age 75, unknown 354.1
2316 Male, age 76, right hemisphere 342.6
2224 Female, age 72, unknown 341.1
2273 Male, age 74, both hemispheres 340.9
2825 Male, age 18, unknown 334.5
2407 Male, age 75, both hemispheres 331.9
Red nucleus
nTPM: 355.8
1821 Female, age 72, unknown 373.2
2503 Female, age 72, unknown 366.7
2785 Male, age 18, unknown 364.4
1865 Male, age 51, unknown 359.2
1904 Male, age 53, unknown 358.1
2823 Male, age 76, right hemisphere 356.7
1954 Female, age 42, unknown 356.3
2769 Male, age 72, unknown 356.0
2227 Male, age 72, unknown 355.3
2725 Female, age 75, unknown 344.2
2588 Male, age 74, left hemisphere 344.1
2584 Male, age 75, left hemisphere 335.2
Substantia nigra
nTPM: 350.3
1916 Female, age 42, unknown 368.5
1851 Male, age 51, unknown 365.5
1889 Female, age 72, unknown 362.1
2665 Male, age 74, both hemispheres 351.0
2409 Female, age 72, unknown 348.2
2241 Male, age 72, unknown 348.0
2583 Male, age 75, right hemisphere 344.3
1941 Male, age 53, unknown 342.9
2590 Female, age 75, unknown 339.7
2699 Male, age 18, unknown 333.1
Superior colliculus
nTPM: 347.0
2668 Female, age 75, unknown 364.4
2087 Female, age 72, unknown 355.1
1895 Male, age 76, right hemisphere 354.8
1796 Male, age 53, unknown 352.8
2261 Male, age 18, unknown 347.1
2587 Male, age 74, left hemisphere 341.8
1913 Female, age 42, unknown 341.2
1995 Male, age 72, unknown 340.3
2664 Male, age 75, both hemispheres 339.7
1839 Male, age 51, unknown 332.6
Ventral tegmental area
nTPM: 346.4
1915 Female, age 42, unknown 358.9
2410 Female, age 72, unknown 353.9
2218 Male, age 76, both hemispheres 345.9
1942 Male, age 51, unknown 343.8
2223 Female, age 72, unknown 340.7
2021 Male, age 53, unknown 335.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 369.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 369.2
Samples: 139

Max nTPM: 831.7
Min nTPM: 179.6
Std nTPM: 100.3
Median nTPM: 347.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 831.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 696.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 659.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 657.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 620.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 577.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 562.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 549.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 547.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 541.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 537.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.6
FF:10158-103A5 76 years, female 69.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 21.0
Sample C Male 24.1
Sample D Male 23.7
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 19.4
Min nTPM: 18.3
Sample B Female 18.8
Sample C Male 19.4
Sample D Male 18.3
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 29.6
Min nTPM: 17.3
Sample A Female 29.6
Sample B Female 17.3
Sample C Male 19.2
Sample D Male 19.6
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.6
Sample A Female 28.9
Sample B Female 23.4
Sample C Male 28.6
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.6
Samples: 4

Max nTPM: 72.2
Min nTPM: 60.1
Sample A Male 66.7
Sample B Male 67.4
Sample C Female 60.1
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70429309 Antisense, RP_050614_01_D09, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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