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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:105.0 nTPM
HPA:105.0 nTPM
GTEx:259.2 nTPM
FANTOM5:140.6 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:265.9 nTPM
Allen mouse:7.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 105.0
Sample id Sample description nTPM
Amygdala
nTPM: 94.2
2514 Male, age 75, right hemisphere 124.9
2517 Female, age 94, left hemisphere 91.9
1987 Female, age 91, left hemisphere 88.5
2814 Male, age 76, right hemisphere 85.0
2695 Female, age 67, right hemisphere 80.7
Basal amygdala
nTPM: 101.5
2243 Female, age 91, right hemisphere 119.2
2685 Female, age 94, left hemisphere 104.8
2827 Female, age 67, right hemisphere 102.8
2110 Male, age 80, left hemisphere 101.5
1955 Male, age 76, both hemispheres 96.8
2609 Male, age 75, right hemisphere 84.0
Central amygdala
nTPM: 103.3
2826 Female, age 94, left hemisphere 151.7
1905 Male, age 76, both hemispheres 102.4
2239 Male, age 80, left hemisphere 100.2
2515 Male, age 75, right hemisphere 85.5
2701 Female, age 91, right hemisphere 76.9
Corticomedial amygdala
nTPM: 91.6
2829 Male, age 80, left hemisphere 101.5
2429 Female, age 94, left hemisphere 99.2
2240 Male, age 76, both hemispheres 92.5
2535 Female, age 67, right hemisphere 87.8
2242 Female, age 91, right hemisphere 85.9
2428 Male, age 75, right hemisphere 82.5
Lateral amygdala
nTPM: 105.0
2534 Female, age 94, left hemisphere 143.7
2830 Female, age 67, right hemisphere 109.4
2516 Male, age 75, right hemisphere 105.1
2255 Female, age 91, right hemisphere 91.1
2256 Male, age 80, left hemisphere 91.0
1883 Male, age 76, both hemispheres 89.3
Stria terminalis, bed nucleus
nTPM: 97.3
1974 Female, age 91, both hemispheres 123.1
2486 Female, age 94, both hemispheres 102.4
2201 Male, age 74, unknown 66.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 259.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 259.2
Samples: 152

Max nTPM: 698.9
Min nTPM: 21.8
Std nTPM: 111.8
Median nTPM: 239.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 698.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 623.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 613.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 533.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 518.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 509.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 459.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 459.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 450.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 449.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 441.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 441.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 429.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 414.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 400.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 397.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 395.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 395.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 395.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 386.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 384.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 367.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 366.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 364.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 364.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 363.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 362.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 361.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 350.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 346.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 343.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 339.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 339.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 335.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 334.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 331.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 325.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 324.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 320.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 319.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 315.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 311.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 309.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 307.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 303.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 302.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 299.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 293.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 291.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 288.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 287.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 286.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 280.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 277.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 275.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 273.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 272.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 272.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 265.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 264.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 263.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 260.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 258.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 258.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 257.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 255.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 255.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 252.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 248.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 247.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 244.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 243.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 242.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 240.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 239.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 239.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 239.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 238.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 237.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 231.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 228.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 227.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 226.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 225.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 215.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 215.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 214.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 212.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 212.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 212.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 211.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 209.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 208.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 207.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 207.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 205.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 204.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 203.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 200.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 196.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 193.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 189.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 186.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 186.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 183.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 182.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 180.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 180.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 180.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 179.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 179.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 178.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 178.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 177.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 176.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 174.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 172.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 172.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 172.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 170.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 169.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 169.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 165.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 164.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 157.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 146.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 141.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 140.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 136.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 134.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 131.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 122.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 122.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 121.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 99.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 92.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 70.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 140.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.6
FF:10151-102I7 76 years, female 140.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.0
Pig sample Sample description nTPM
Amygdala
nTPM: 43.0
Samples: 4

Max nTPM: 49.3
Min nTPM: 35.3
Sample A Female 49.3
Sample B Female 46.5
Sample C Male 41.0
Sample D Male 35.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 265.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 266.0
Samples: 4

Max nTPM: 368.0
Min nTPM: 206.9
Sample A Male 206.9
Sample B Male 270.3
Sample C Female 368.0
Sample D Female 218.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.2
74749895 Antisense, RP_060220_04_F01, Mouse strain C57BL/6J (56 days, male) 7.5
69817952 Antisense, RP_050510_04_B01, Mouse strain C57BL/6J (56 days, male) 6.9

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