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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:786.9 nTPM
HPA:786.9 nTPM
FANTOM5:1527.5 Scaled Tags Per Million
Pig:1102.7 nTPM
Allen mouse:3.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 786.9
Sample id Sample description nTPM
Area postrema
nTPM: 355.7
2306 Male, age 80, both hemispheres 448.7
2799 Male, age 61, both hemispheres 368.6
2054 Male, age 76, both hemispheres 250.0
Cuneate nuclei
nTPM: 551.8
2376 Male, age 61, both hemispheres 678.2
2381 Male, age 80, both hemispheres 610.4
2131 Male, age 76, both hemispheres 366.8
Dorsal medullary reticular nucleus
nTPM: 476.3
2040 Female, age 85, both hemispheres 513.3
2373 Male, age 61, both hemispheres 493.3
2088 Male, age 76, both hemispheres 422.3
Dorsal motor vagal complex
nTPM: 254.7
2185 Male, age 76, both hemispheres 385.4
2000 Male, age 74, unknown 316.0
2133 Female, age 91, both hemispheres 309.0
2807 Female, age 85, both hemispheres 265.5
2797 Male, age 61, both hemispheres 210.9
2844 Male, age 55, unknown 194.4
2643 Male, age 74, both hemispheres 194.2
2813 Female, age 72, unknown 162.0
Gigantocellular reticular nuclei, medullary
nTPM: 527.9
2314 Male, age 61, both hemispheres 895.8
2387 Female, age 91, both hemispheres 643.5
1876 Female, age 85, both hemispheres 599.3
2310 Male, age 80, both hemispheres 423.7
2022 Male, age 76, right hemisphere 309.9
2462 Male, age 74, both hemispheres 295.0
Gigantocellular reticular nuclei, pars
nTPM: 399.0
2336 Male, age 61, both hemispheres 449.5
2706 Male, age 80, both hemispheres 414.6
2330 Male, age 80, both hemispheres 406.9
2084 Female, age 85, both hemispheres 399.3
2168 Male, age 76, both hemispheres 324.8
Inferior olive
nTPM: 544.5
2178 Male, age 61, both hemispheres 739.8
2085 Female, age 85, both hemispheres 550.5
2563 Male, age 74, both hemispheres 544.2
2379 Male, age 80, both hemispheres 507.1
2628 Female, age 91, both hemispheres 380.7
Lateral medullary reticular nucleus
nTPM: 532.0
2305 Male, age 74, both hemispheres 651.9
2852 Male, age 80, both hemispheres 635.0
2190 Female, age 85, both hemispheres 569.5
2374 Male, age 61, both hemispheres 508.4
2804 Female, age 91, both hemispheres 425.3
2044 Male, age 76, both hemispheres 402.1
Medial vestibular nucleus
nTPM: 434.6
2093 Male, age 80, both hemispheres 568.8
2801 Male, age 74, both hemispheres 554.5
2803 Female, age 91, both hemispheres 503.4
2743 Female, age 85, both hemispheres 394.5
2624 Male, age 61, both hemispheres 372.8
2134 Male, age 76, both hemispheres 213.3
Motor hypoglossal nucleus
nTPM: 385.9
2125 Female, age 91, both hemispheres 594.4
2132 Female, age 85, both hemispheres 564.4
2182 Male, age 80, both hemispheres 449.8
2277 Male, age 76, both hemispheres 162.8
2461 Male, age 61, both hemispheres 157.9
Nucleus ambiguus
nTPM: 553.0
2071 Male, age 76, both hemispheres 660.0
2096 Female, age 85, both hemispheres 446.1
Nucleus cuneatus
nTPM: 463.4
2380 Male, age 80, both hemispheres 679.6
2808 Female, age 85, both hemispheres 613.4
2100 Male, age 76, both hemispheres 472.8
2564 Male, age 74, both hemispheres 426.5
2562 Male, age 61, both hemispheres 296.8
2805 Female, age 91, both hemispheres 291.3
Nucleus gracilis
nTPM: 499.3
2382 Male, age 80, both hemispheres 658.8
2299 Female, age 85, both hemispheres 425.5
2627 Male, age 74, both hemispheres 413.7
Nucleus raphe magnus
nTPM: 357.9
2459 Female, age 91, both hemispheres 503.6
2328 Male, age 80, both hemispheres 416.9
2455 Male, age 74, both hemispheres 399.8
2051 Male, age 76, both hemispheres 340.3
2160 Male, age 61, both hemispheres 272.9
2172 Female, age 85, both hemispheres 214.0
Nucleus raphe obscurus
nTPM: 786.9
2845 Female, age 85, midline 864.5
2800 Male, age 61, midline 846.8
2142 Male, age 76, midline 649.2
Nucleus raphe pallidus
nTPM: 711.8
1924 Male, age 61, midline 981.7
2145 Male, age 76, midline 643.2
2183 Male, age 80, midline 510.5
Nucleus tractus solitarii
nTPM: 196.3
2144 Female, age 91, right hemisphere 204.8
2656 Male, age 76, both hemispheres 196.0
2307 Male, age 80, both hemispheres 192.4
2191 Female, age 85, both hemispheres 192.1
Parvicellular reticular nuclei
nTPM: 432.4
2119 Male, age 80, both hemispheres 525.0
2095 Male, age 76, both hemispheres 461.5
2558 Male, age 74, both hemispheres 310.6
Parvicellular reticular nuclei, medullary
nTPM: 377.9
2189 Female, age 91, both hemispheres 412.8
2091 Female, age 85, both hemispheres 393.2
2181 Male, age 80, left hemisphere 327.7
Peritrigeminal nucleus
nTPM: 515.0
2067 Female, age 85, both hemispheres 553.3
2179 Male, age 61, both hemispheres 537.7
2136 Male, age 76, both hemispheres 454.1
Prepositus hypoglossal nucleus
nTPM: 501.2
2855 Female, age 85, right hemisphere 698.1
2086 Male, age 80, both hemispheres 304.2
Spinal trigeminal nucleus, caudal
nTPM: 440.6
2312 Male, age 61, both hemispheres 586.3
2308 Male, age 80, both hemispheres 479.7
2447 Male, age 76, both hemispheres 454.5
2390 Female, age 91, both hemispheres 392.3
2642 Male, age 74, both hemispheres 290.2
Spinal trigeminal nucleus, interpolar
nTPM: 356.4
2386 Female, age 85, both hemispheres 432.8
2033 Male, age 80, both hemispheres 416.8
2389 Female, age 91, both hemispheres 403.0
2066 Male, age 76, right hemisphere 319.5
2625 Male, age 61, both hemispheres 209.7
Spinal vestibular nucleus
nTPM: 447.2
2748 Male, age 76, both hemispheres 561.9
2806 Female, age 85, both hemispheres 521.3
2186 Female, age 91, both hemispheres 459.7
2384 Male, age 74, both hemispheres 444.8
2780 Male, age 80, both hemispheres 428.4
2796 Male, age 61, both hemispheres 266.8
Ventral medullary reticular nucleus
nTPM: 623.0
2372 Male, age 61, both hemispheres 721.2
2060 Male, age 76, both hemispheres 524.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 501.4
2180 Male, age 61, both hemispheres 614.8
2118 Male, age 80, both hemispheres 591.0
2741 Female, age 85, both hemispheres 476.7
1986 Male, age 76, both hemispheres 414.5
2302 Female, age 91, both hemispheres 410.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1527.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1527.5
FF:10038-101F2 18-64 years, mixed 1928.6
FF:10174-103C3 60 years, female 1398.3
FF:10155-103A2 76 years, female 1255.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1102.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1102.8
Samples: 4

Max nTPM: 1345.4
Min nTPM: 727.8
Sample A Female 1213.2
Sample B Female 727.8
Sample C Male 1124.6
Sample D Male 1345.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.8
68795444 Antisense, RP_041130_01_F08, Mouse strain C57BL/6J (56 days, male) 3.8

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