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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2433.0 nTPM
GTEx:2433.0 nTPM
FANTOM5:568.8 Scaled Tags Per Million
Pig:94.3 nTPM
Mouse:238.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2433.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2433.0
Samples: 105

Max nTPM: 4712.3
Min nTPM: 759.4
Std nTPM: 724.5
Median nTPM:
137_1 83 years, male 4712.3
506_1 65 years, male 4135.4
264_1 73 years, female 4023.9
376_1 75 years, female 3831.5
177_1 74 years, male 3741.4
163_1 78 years, male 3694.1
452_1 88 years, female 3600.2
173_1 67 years, male 3415.3
295_1 61 years, female 3414.7
394_1 75 years, female 3262.0
351_1 91 years, male 3239.7
384_1 83 years, male 3211.3
18_1 88 years, male 3198.3
379_1 60 years, male 3159.6
189_1 76 years, male 3139.9
17_1 71 years, male 3134.2
322_1 76 years, male 3105.3
4_1 88 years, female 3104.9
99_1 64 years, male 3098.5
386_1 76 years, male 3071.5
145_1 84 years, male 3066.9
308_1 70 years, female 3028.5
317_1 60 years, male 3027.4
406_1 79 years, male 3021.0
243_1 75 years, male 2998.8
288_1 66 years, female 2984.4
115_1 83 years, male 2969.6
396_1 62 years, male 2964.1
389_1 86 years, female 2956.3
503_1 68 years, male 2952.0
237_1 82 years, male 2928.4
447_1 81 years, male 2865.9
377_1 82 years, female 2810.0
353_1 82 years, female 2767.2
356_1 87 years, female 2730.7
319_1 81 years, male 2723.0
349_1 83 years, male 2704.6
404_1 82 years, female 2628.3
518_1 75 years, female 2586.1
172_1 72 years, female 2583.5
375_1 74 years, female 2563.9
316_1 62 years, male 2511.7
480_1 63 years, male 2486.6
347_1 72 years, male 2469.7
348_1 84 years, male 2462.1
314_1 67 years, male 2444.0
315_1 62 years, female 2435.9
218_1 71 years, female 2432.9
126_1 63 years, male 2420.4
142_1 61 years, female 2379.1
526_1 61 years, male 2361.2
320_1 89 years, female 2358.2
354_1 81 years, female 2355.2
41_1 94 years, female 2338.3
501_1 88 years, male 2336.9
120_1 70 years, female 2331.7
109_1 81 years, female 2331.0
335_1 73 years, female 2294.2
405_1 91 years, male 2280.7
321_1 62 years, female 2276.2
425_1 59 years, female 2263.1
313_1 79 years, female 2260.0
254_1 77 years, female 2193.4
6_1 73 years, female 2192.4
251_1 78 years, male 2188.1
42_1 85 years, male 2185.3
35_1 74 years, female 2139.0
318_1 68 years, male 2135.7
291_1 76 years, male 2133.8
246_1 77 years, male 2132.6
350_1 84 years, female 2126.8
117_1 61 years, male 2122.9
9_1 66 years, female 2115.8
265_1 87 years, male 2115.8
217_1 76 years, male 2103.4
266_1 85 years, male 2088.0
286_1 68 years, female 2078.6
293_1 68 years, female 2060.9
292_1 71 years, male 2038.0
229_1 69 years, female 2024.6
352_1 62 years, male 2001.1
307_1 66 years, female 1968.8
517_1 88 years, male 1967.3
468_1 89 years, male 1965.9
355_1 70 years, female 1962.1
311_1 78 years, male 1939.2
81_1 67 years, male 1923.8
119_1 70 years, female 1908.7
324_1 76 years, male 1834.3
162_1 79 years, female 1740.3
2_1 77 years, female 1674.1
495_1 57 years, female 1558.5
139_1 64 years, female 1557.9
89_1 63 years, male 1468.0
153_1 70 years, female 1457.4
414_1 84 years, female 1406.0
499_1 55 years, female 1378.2
43_1 64 years, female 1342.5
32_1 67 years, male 1312.4
149_1 88 years, male 1266.9
415_1 77 years, female 1063.9
413_1 59 years, female 996.3
466_1 57 years, female 986.0
491_1 89 years, female 864.6
490_1 67 years, female 759.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 568.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 568.8
FF:10030-101E3 24-65 years, mixed 568.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.3
Pig sample Sample description nTPM
Retina
nTPM: 94.3
Samples: 4

Max nTPM: 131.6
Min nTPM: 57.4
Sample A Female 77.8
Sample B Female 110.3
Sample C Male 131.6
Sample D Male 57.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 238.0
Mouse sample Sample description nTPM
Retina
nTPM: 238.0
Samples: 4

Max nTPM: 303.8
Min nTPM: 208.4
Sample A Male 218.9
Sample B Male 208.4
Sample C Female 303.8
Sample D Female 220.9

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by the Knut & Alice Wallenberg Foundation.