MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:275.4 nTPM
HPA:275.4 nTPM
GTEx:300.9 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Mouse:217.2 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 275.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 265.4
1870 Female, age 42, unknown 276.4
1833 Male, age 53, unknown 274.5
1827 Male, age 72, unknown 273.2
1830 Male, age 51, unknown 271.3
2019 Male, age 18, unknown 271.0
2411 Female, age 72, unknown 270.0
2666 Male, age 74, left hemisphere 269.1
2828 Female, age 72, unknown 264.0
2219 Male, age 76, both hemispheres 248.6
2586 Male, age 75, left hemisphere 235.5
Dorsal raphe nucleus
nTPM: 267.8
2298 Female, age 72, unknown 278.8
2750 Male, age 76, both hemispheres 272.3
2016 Female, age 72, unknown 271.5
1828 Male, age 53, unknown 266.3
2047 Male, age 72, unknown 250.3
Inferior colliculus
nTPM: 266.9
2097 Female, age 72, unknown 271.9
2849 Male, age 72, unknown 270.1
1848 Female, age 42, unknown 264.9
1890 Male, age 53, unknown 260.7
Median raphe nucleus
nTPM: 267.0
2220 Male, age 76, midline 267.0
Pedunculopontine tegmental nucleus
nTPM: 272.5
2338 Male, age 61, both hemispheres 283.8
2334 Male, age 80, both hemispheres 274.0
1921 Female, age 85, both hemispheres 259.9
Periaquaductal grey, anterior
nTPM: 262.8
2502 Female, age 75, unknown 270.5
1795 Male, age 51, unknown 259.4
1947 Male, age 18, unknown 258.4
Periaquaductal grey, dorsal
nTPM: 269.1
2850 Male, age 76, both hemispheres 287.5
1840 Male, age 53, unknown 265.0
1831 Male, age 72, unknown 263.7
2464 Female, age 72, unknown 260.1
Periaquaductal grey, lateral
nTPM: 273.4
2140 Male, age 76, both hemispheres 279.9
2272 Male, age 74, both hemispheres 275.1
2053 Male, age 18, unknown 265.2
Pretectal area
nTPM: 271.1
2273 Male, age 74, both hemispheres 284.5
1815 Male, age 53, unknown 280.1
1817 Female, age 42, unknown 278.9
2224 Female, age 72, unknown 275.6
1816 Male, age 51, unknown 270.1
2825 Male, age 18, unknown 268.6
1944 Female, age 72, unknown 268.5
2316 Male, age 76, right hemisphere 268.2
2007 Male, age 72, unknown 267.6
2667 Female, age 75, unknown 263.0
2407 Male, age 75, both hemispheres 257.0
Red nucleus
nTPM: 275.4
2503 Female, age 72, unknown 287.7
2725 Female, age 75, unknown 287.0
1821 Female, age 72, unknown 286.2
1904 Male, age 53, unknown 276.8
2227 Male, age 72, unknown 276.7
2588 Male, age 74, left hemisphere 276.1
1865 Male, age 51, unknown 275.9
1954 Female, age 42, unknown 274.5
2785 Male, age 18, unknown 271.5
2769 Male, age 72, unknown 271.3
2823 Male, age 76, right hemisphere 270.8
2584 Male, age 75, left hemisphere 250.6
Substantia nigra
nTPM: 272.5
2699 Male, age 18, unknown 282.8
2409 Female, age 72, unknown 279.6
2241 Male, age 72, unknown 276.9
1851 Male, age 51, unknown 276.0
1916 Female, age 42, unknown 275.4
1889 Female, age 72, unknown 275.2
2665 Male, age 74, both hemispheres 271.4
2590 Female, age 75, unknown 269.1
1941 Male, age 53, unknown 266.4
2583 Male, age 75, right hemisphere 252.1
Superior colliculus
nTPM: 267.6
2587 Male, age 74, left hemisphere 286.9
1995 Male, age 72, unknown 280.0
1913 Female, age 42, unknown 275.4
1839 Male, age 51, unknown 270.7
2261 Male, age 18, unknown 268.8
2087 Female, age 72, unknown 267.1
1796 Male, age 53, unknown 265.9
1895 Male, age 76, right hemisphere 262.5
2668 Female, age 75, unknown 259.4
2664 Male, age 75, both hemispheres 239.2
Ventral tegmental area
nTPM: 270.5
2410 Female, age 72, unknown 276.9
2223 Female, age 72, unknown 274.7
2218 Male, age 76, both hemispheres 273.0
1915 Female, age 42, unknown 270.5
2021 Male, age 53, unknown 268.1
1942 Male, age 51, unknown 260.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 300.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 300.9
Samples: 139

Max nTPM: 492.0
Min nTPM: 177.7
Std nTPM: 65.5
Median nTPM: 293.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 492.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 482.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 460.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 456.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 428.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 426.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 424.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 418.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 418.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 415.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 414.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 217.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 217.2
Samples: 4

Max nTPM: 226.0
Min nTPM: 205.2
Sample A Male 205.2
Sample B Male 212.7
Sample C Female 226.0
Sample D Female 225.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
100143529 Antisense, RP_110407_01_D06, Mouse strain C57BL/6J (56 days, male) 4.2

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