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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:185.3 nTPM
GTEx:185.3 nTPM
FANTOM5:30.6 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:30.8 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA042955
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA060190
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer High
Inner nuclear layer Not detected
Inner plexiform layer Medium
Ganglion cells Not detected
Nerve fiber layer Medium

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 185.3
Samples: 105

Max nTPM: 395.4
Min nTPM: 72.7
Std nTPM: 51.9
Median nTPM:
413_1 59 years, female 395.4
414_1 84 years, female 363.6
142_1 61 years, female 300.4
466_1 57 years, female 298.1
217_1 76 years, male 285.6
149_1 88 years, male 274.9
266_1 85 years, male 273.3
229_1 69 years, female 263.1
499_1 55 years, female 260.4
43_1 64 years, female 252.9
377_1 82 years, female 249.7
501_1 88 years, male 242.0
394_1 75 years, female 236.3
288_1 66 years, female 234.7
265_1 87 years, male 231.6
162_1 79 years, female 231.0
313_1 79 years, female 229.5
376_1 75 years, female 228.9
415_1 77 years, female 228.8
335_1 73 years, female 224.3
137_1 83 years, male 222.1
153_1 70 years, female 220.1
81_1 67 years, male 216.4
4_1 88 years, female 216.2
468_1 89 years, male 215.6
172_1 72 years, female 213.5
246_1 77 years, male 212.4
518_1 75 years, female 207.5
189_1 76 years, male 205.3
404_1 82 years, female 203.5
6_1 73 years, female 201.8
396_1 62 years, male 201.8
32_1 67 years, male 200.9
503_1 68 years, male 200.9
237_1 82 years, male 197.6
163_1 78 years, male 195.5
495_1 57 years, female 195.1
526_1 61 years, male 192.8
406_1 79 years, male 192.3
264_1 73 years, female 190.7
126_1 63 years, male 188.5
286_1 68 years, female 188.5
389_1 86 years, female 187.6
139_1 64 years, female 187.4
311_1 78 years, male 186.5
318_1 68 years, male 186.0
18_1 88 years, male 184.3
35_1 74 years, female 184.0
352_1 62 years, male 183.7
324_1 76 years, male 183.3
405_1 91 years, male 183.3
315_1 62 years, female 183.0
89_1 63 years, male 180.5
517_1 88 years, male 179.6
115_1 83 years, male 178.2
254_1 77 years, female 178.2
490_1 67 years, female 176.9
177_1 74 years, male 176.5
308_1 70 years, female 175.2
379_1 60 years, male 173.6
375_1 74 years, female 173.1
109_1 81 years, female 172.9
316_1 62 years, male 171.7
292_1 71 years, male 171.3
314_1 67 years, male 170.5
117_1 61 years, male 169.2
17_1 71 years, male 166.0
480_1 63 years, male 165.7
425_1 59 years, female 162.2
319_1 81 years, male 161.5
356_1 87 years, female 161.4
295_1 61 years, female 160.6
348_1 84 years, male 156.4
120_1 70 years, female 155.9
291_1 76 years, male 155.7
293_1 68 years, female 154.8
354_1 81 years, female 154.8
350_1 84 years, female 153.1
351_1 91 years, male 152.1
251_1 78 years, male 150.0
349_1 83 years, male 149.1
243_1 75 years, male 148.9
9_1 66 years, female 148.2
506_1 65 years, male 144.5
145_1 84 years, male 143.0
452_1 88 years, female 140.5
353_1 82 years, female 138.5
320_1 89 years, female 136.7
307_1 66 years, female 133.6
491_1 89 years, female 133.4
173_1 67 years, male 133.1
447_1 81 years, male 129.1
355_1 70 years, female 127.3
218_1 71 years, female 126.3
322_1 76 years, male 126.0
2_1 77 years, female 125.2
321_1 62 years, female 124.8
317_1 60 years, male 122.0
386_1 76 years, male 119.4
347_1 72 years, male 112.2
119_1 70 years, female 111.9
384_1 83 years, male 111.6
42_1 85 years, male 106.7
99_1 64 years, male 102.9
41_1 94 years, female 72.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 30.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 30.6
FF:10030-101E3 24-65 years, mixed 30.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.0
Pig sample Sample description nTPM
Retina
nTPM: 25.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 23.3
Sample A Female 24.9
Sample B Female 23.3
Sample C Male 28.0
Sample D Male 23.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.8
Mouse sample Sample description nTPM
Retina
nTPM: 30.9
Samples: 4

Max nTPM: 49.2
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 49.2
Sample C Female 26.6
Sample D Female 28.1

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by the Knut & Alice Wallenberg Foundation.