We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PHGDH
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PHGDH
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:139.4 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:44.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA021241Antibody HPA024031Antibody CAB003681Antibody CAB068216
Glial cells HighHighHighHigh
Neuronal cells LowNot detected-Low








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 139.4
Samples: 246

Max nTPM: 322.8
Min nTPM: 21.1
Std nTPM: 53.7
Median nTPM: 130.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 322.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 306.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 291.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 290.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 284.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 273.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 272.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 268.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 258.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 257.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 257.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 256.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 251.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 250.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 239.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 239.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 234.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 234.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 233.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 231.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 230.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 226.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 221.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 220.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 220.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 219.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 218.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 207.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 201.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 200.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 198.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 197.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 197.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 196.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 195.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 195.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 192.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 191.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 189.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 186.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 186.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 184.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 184.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 184.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 182.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 181.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 180.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 178.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 177.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 173.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 172.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 172.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 172.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 171.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 171.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 170.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 169.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 168.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 168.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 167.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 167.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 167.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 166.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 165.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 164.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 163.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 161.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 161.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 161.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 159.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 159.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 159.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 158.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 156.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 155.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 152.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 152.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 151.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 151.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 151.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 150.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 150.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 150.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 148.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 148.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 148.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 147.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 147.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 145.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 144.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 144.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 144.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 144.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 143.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 143.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 142.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 142.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 141.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 141.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 141.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 141.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 138.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 137.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 137.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 136.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 136.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 136.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 135.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 135.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 135.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 134.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 134.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 133.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 132.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 131.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 129.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 129.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 128.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 128.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 128.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 127.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 127.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 125.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 125.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 125.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 124.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 124.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 124.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 123.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 123.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 123.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 123.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 122.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 122.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 121.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 121.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 121.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 120.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 120.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 119.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 117.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 116.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 116.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 116.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 115.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 114.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 111.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 111.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 110.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 108.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 108.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 108.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 107.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 107.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 107.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 106.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 106.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 106.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 105.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 105.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 105.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 105.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 104.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 103.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 103.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 103.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 102.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 100.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 100.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 100.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 99.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 99.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 99.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 98.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 98.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 97.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 96.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 96.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 94.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 93.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 93.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 93.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 92.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 91.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 91.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 90.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 90.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 90.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 89.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 88.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 88.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 88.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 88.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 87.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 87.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 85.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 85.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 85.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 84.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 83.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 83.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 82.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 81.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 80.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 80.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 78.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 76.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 75.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 74.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 73.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 73.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 72.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 68.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 66.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 66.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 64.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 63.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 63.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 60.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 59.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 56.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 53.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 52.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 21.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.5
FF:10164-103B2 76 years, female 86.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.5
Pig sample Sample description nTPM
Caudate
nTPM: 44.6
Samples: 4

Max nTPM: 59.0
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 44.1
Sample C Male 59.0
Sample D Male 39.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.