MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.3 nTPM
HPA:105.3 nTPM
GTEx:53.0 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:9.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.0
2828 Female, age 72, unknown 104.9
1827 Male, age 72, unknown 88.8
1870 Female, age 42, unknown 88.6
2586 Male, age 75, left hemisphere 88.3
2666 Male, age 74, left hemisphere 81.0
1833 Male, age 53, unknown 77.5
1830 Male, age 51, unknown 76.6
2411 Female, age 72, unknown 73.9
2219 Male, age 76, both hemispheres 70.9
2019 Male, age 18, unknown 69.6
Dorsal raphe nucleus
nTPM: 89.5
2016 Female, age 72, unknown 107.4
1828 Male, age 53, unknown 94.8
2298 Female, age 72, unknown 92.0
2047 Male, age 72, unknown 80.7
2750 Male, age 76, both hemispheres 72.8
Inferior colliculus
nTPM: 87.7
1848 Female, age 42, unknown 92.2
2849 Male, age 72, unknown 91.2
2097 Female, age 72, unknown 86.3
1890 Male, age 53, unknown 81.3
Median raphe nucleus
nTPM: 79.9
2220 Male, age 76, midline 79.9
Pedunculopontine tegmental nucleus
nTPM: 76.2
2338 Male, age 61, both hemispheres 77.0
1921 Female, age 85, both hemispheres 76.1
2334 Male, age 80, both hemispheres 75.4
Periaquaductal grey, anterior
nTPM: 92.6
1795 Male, age 51, unknown 99.4
2502 Female, age 75, unknown 91.4
1947 Male, age 18, unknown 87.0
Periaquaductal grey, dorsal
nTPM: 99.9
2850 Male, age 76, both hemispheres 108.4
1840 Male, age 53, unknown 101.6
1831 Male, age 72, unknown 98.7
2464 Female, age 72, unknown 91.1
Periaquaductal grey, lateral
nTPM: 105.3
2140 Male, age 76, both hemispheres 111.5
2053 Male, age 18, unknown 108.4
2272 Male, age 74, both hemispheres 95.8
Pretectal area
nTPM: 89.5
2273 Male, age 74, both hemispheres 104.9
2224 Female, age 72, unknown 98.3
2825 Male, age 18, unknown 97.3
2667 Female, age 75, unknown 92.8
1944 Female, age 72, unknown 92.0
1816 Male, age 51, unknown 90.5
2316 Male, age 76, right hemisphere 87.3
1815 Male, age 53, unknown 84.5
2407 Male, age 75, both hemispheres 84.5
1817 Female, age 42, unknown 81.1
2007 Male, age 72, unknown 70.7
Red nucleus
nTPM: 79.7
2503 Female, age 72, unknown 88.5
2725 Female, age 75, unknown 88.3
2769 Male, age 72, unknown 84.0
2227 Male, age 72, unknown 83.6
1954 Female, age 42, unknown 82.7
1821 Female, age 72, unknown 78.7
2823 Male, age 76, right hemisphere 77.6
1904 Male, age 53, unknown 76.8
1865 Male, age 51, unknown 76.7
2588 Male, age 74, left hemisphere 74.9
2584 Male, age 75, left hemisphere 73.0
2785 Male, age 18, unknown 71.0
Substantia nigra
nTPM: 81.3
2699 Male, age 18, unknown 104.1
1916 Female, age 42, unknown 83.2
1851 Male, age 51, unknown 82.9
2590 Female, age 75, unknown 80.2
2583 Male, age 75, right hemisphere 79.7
2409 Female, age 72, unknown 78.4
1889 Female, age 72, unknown 77.9
1941 Male, age 53, unknown 76.3
2241 Male, age 72, unknown 76.0
2665 Male, age 74, both hemispheres 73.8
Superior colliculus
nTPM: 90.7
1995 Male, age 72, unknown 107.5
1796 Male, age 53, unknown 96.4
1913 Female, age 42, unknown 94.9
2261 Male, age 18, unknown 93.8
2664 Male, age 75, both hemispheres 91.8
2087 Female, age 72, unknown 90.2
1839 Male, age 51, unknown 89.1
2587 Male, age 74, left hemisphere 87.0
1895 Male, age 76, right hemisphere 78.3
2668 Female, age 75, unknown 77.7
Ventral tegmental area
nTPM: 83.4
2021 Male, age 53, unknown 92.2
1915 Female, age 42, unknown 87.5
1942 Male, age 51, unknown 81.2
2223 Female, age 72, unknown 80.8
2410 Female, age 72, unknown 79.7
2218 Male, age 76, both hemispheres 78.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.0
Samples: 139

Max nTPM: 117.3
Min nTPM: 8.3
Std nTPM: 20.6
Median nTPM: 50.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 117.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 111.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 104.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 96.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 95.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 91.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 90.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 86.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 85.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.6
FF:10158-103A5 76 years, female 69.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 53.6
Min nTPM: 15.3
Sample A Female 53.6
Sample B Female 23.8
Sample C Male 33.0
Sample D Male 15.3
Periaqueductal gray
nTPM: 37.3
Samples: 3

Max nTPM: 40.0
Min nTPM: 32.0
Sample B Female 32.0
Sample C Male 39.9
Sample D Male 40.0
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 31.6
Min nTPM: 24.7
Sample A Female 29.0
Sample B Female 31.6
Sample C Male 25.3
Sample D Male 24.7
Superior colliculi
nTPM: 47.1
Samples: 4

Max nTPM: 95.0
Min nTPM: 24.5
Sample A Female 36.9
Sample B Female 95.0
Sample C Male 31.9
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.7
Sample A Male 10.4
Sample B Male 8.7
Sample C Female 9.0
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
2715 Antisense, RP_Baylor_103103, Mouse strain C57BL/6J (56 days, male) 0.1
2716 Antisense, RP_Baylor_103103, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.