MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:874.9 nTPM
HPA:874.9 nTPM
GTEx:803.0 nTPM
FANTOM5:237.5 Scaled Tags Per Million
Pig:412.5 nTPM
Mouse:956.8 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 874.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 819.2
2019 Male, age 18, unknown 839.5
1870 Female, age 42, unknown 837.1
1827 Male, age 72, unknown 834.2
2411 Female, age 72, unknown 830.7
2666 Male, age 74, left hemisphere 830.2
2828 Female, age 72, unknown 817.3
2219 Male, age 76, both hemispheres 814.6
1833 Male, age 53, unknown 801.3
1830 Male, age 51, unknown 799.3
2586 Male, age 75, left hemisphere 788.0
Dorsal raphe nucleus
nTPM: 826.5
2047 Male, age 72, unknown 838.7
2298 Female, age 72, unknown 837.5
2750 Male, age 76, both hemispheres 832.5
1828 Male, age 53, unknown 827.0
2016 Female, age 72, unknown 796.8
Inferior colliculus
nTPM: 810.5
1890 Male, age 53, unknown 824.5
2097 Female, age 72, unknown 822.5
2849 Male, age 72, unknown 798.8
1848 Female, age 42, unknown 796.2
Median raphe nucleus
nTPM: 843.0
2220 Male, age 76, midline 843.0
Pedunculopontine tegmental nucleus
nTPM: 874.9
2338 Male, age 61, both hemispheres 934.7
2334 Male, age 80, both hemispheres 854.3
1921 Female, age 85, both hemispheres 835.7
Periaquaductal grey, anterior
nTPM: 810.5
1795 Male, age 51, unknown 821.4
2502 Female, age 75, unknown 807.6
1947 Male, age 18, unknown 802.6
Periaquaductal grey, dorsal
nTPM: 814.5
2850 Male, age 76, both hemispheres 844.9
1831 Male, age 72, unknown 813.5
1840 Male, age 53, unknown 804.2
2464 Female, age 72, unknown 795.4
Periaquaductal grey, lateral
nTPM: 811.7
2140 Male, age 76, both hemispheres 829.3
2272 Male, age 74, both hemispheres 803.7
2053 Male, age 18, unknown 802.1
Pretectal area
nTPM: 836.3
1816 Male, age 51, unknown 876.3
1817 Female, age 42, unknown 876.0
2007 Male, age 72, unknown 865.8
1944 Female, age 72, unknown 858.8
1815 Male, age 53, unknown 854.2
2224 Female, age 72, unknown 823.8
2667 Female, age 75, unknown 820.9
2825 Male, age 18, unknown 812.9
2316 Male, age 76, right hemisphere 810.1
2273 Male, age 74, both hemispheres 804.6
2407 Male, age 75, both hemispheres 796.4
Red nucleus
nTPM: 832.4
2503 Female, age 72, unknown 852.0
2725 Female, age 75, unknown 850.7
2785 Male, age 18, unknown 849.1
1821 Female, age 72, unknown 844.2
1865 Male, age 51, unknown 843.9
1954 Female, age 42, unknown 831.6
2823 Male, age 76, right hemisphere 830.1
1904 Male, age 53, unknown 829.5
2588 Male, age 74, left hemisphere 825.5
2227 Male, age 72, unknown 820.1
2769 Male, age 72, unknown 819.6
2584 Male, age 75, left hemisphere 792.1
Substantia nigra
nTPM: 833.3
1916 Female, age 42, unknown 862.6
2409 Female, age 72, unknown 849.1
1889 Female, age 72, unknown 847.1
1851 Male, age 51, unknown 837.8
2665 Male, age 74, both hemispheres 837.5
1941 Male, age 53, unknown 835.2
2699 Male, age 18, unknown 828.3
2590 Female, age 75, unknown 822.2
2241 Male, age 72, unknown 812.9
2583 Male, age 75, right hemisphere 800.1
Superior colliculus
nTPM: 817.3
2087 Female, age 72, unknown 836.3
2587 Male, age 74, left hemisphere 835.3
1913 Female, age 42, unknown 830.0
2668 Female, age 75, unknown 823.6
2261 Male, age 18, unknown 822.7
1796 Male, age 53, unknown 822.2
1995 Male, age 72, unknown 815.2
1895 Male, age 76, right hemisphere 810.1
1839 Male, age 51, unknown 795.8
2664 Male, age 75, both hemispheres 781.9
Ventral tegmental area
nTPM: 827.7
2218 Male, age 76, both hemispheres 844.5
1915 Female, age 42, unknown 841.8
2410 Female, age 72, unknown 836.9
2223 Female, age 72, unknown 819.8
2021 Male, age 53, unknown 813.6
1942 Male, age 51, unknown 809.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 803.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 803.0
Samples: 139

Max nTPM: 1737.7
Min nTPM: 335.6
Std nTPM: 234.9
Median nTPM: 754.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1737.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1698.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1630.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1504.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1494.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1331.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1225.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1209.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1180.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1174.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1098.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.5
FF:10158-103A5 76 years, female 237.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 412.5
Pig sample Sample description nTPM
Midbrain
nTPM: 373.3
Samples: 4

Max nTPM: 470.7
Min nTPM: 294.1
Sample A Female 470.7
Sample B Female 342.5
Sample C Male 385.7
Sample D Male 294.1
Periaqueductal gray
nTPM: 266.2
Samples: 3

Max nTPM: 305.1
Min nTPM: 224.7
Sample B Female 268.9
Sample C Male 305.1
Sample D Male 224.7
Substantia nigra
nTPM: 411.0
Samples: 4

Max nTPM: 516.5
Min nTPM: 274.5
Sample A Female 516.5
Sample B Female 500.6
Sample C Male 352.5
Sample D Male 274.5
Superior colliculi
nTPM: 412.5
Samples: 4

Max nTPM: 468.7
Min nTPM: 351.6
Sample A Female 468.7
Sample B Female 452.6
Sample C Male 377.1
Sample D Male 351.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 956.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 956.8
Samples: 4

Max nTPM: 1005.7
Min nTPM: 907.2
Sample A Male 988.9
Sample B Male 907.2
Sample C Female 925.3
Sample D Female 1005.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
68633312 Antisense, RP_050125_02_F08, Mouse strain C57BL/6J (56 days, male) 14.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.