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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:252.6 nTPM
HPA:252.6 nTPM
GTEx:171.3 nTPM
FANTOM5:1039.0 Scaled Tags Per Million
Pig:368.4 nTPM
Mouse:54.8 nTPM
Allen mouse:16.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 252.6
Sample id Sample description nTPM
Amygdala
nTPM: 252.6
1987 Female, age 91, left hemisphere 266.9
2695 Female, age 67, right hemisphere 265.0
2814 Male, age 76, right hemisphere 259.3
2517 Female, age 94, left hemisphere 243.3
2514 Male, age 75, right hemisphere 228.7
Basal amygdala
nTPM: 201.3
2110 Male, age 80, left hemisphere 253.1
2685 Female, age 94, left hemisphere 213.7
2609 Male, age 75, right hemisphere 207.6
1955 Male, age 76, both hemispheres 196.0
2243 Female, age 91, right hemisphere 189.2
2827 Female, age 67, right hemisphere 148.1
Central amygdala
nTPM: 237.6
2826 Female, age 94, left hemisphere 290.8
2239 Male, age 80, left hemisphere 259.8
2515 Male, age 75, right hemisphere 250.6
1905 Male, age 76, both hemispheres 225.8
2701 Female, age 91, right hemisphere 161.2
Corticomedial amygdala
nTPM: 174.5
2829 Male, age 80, left hemisphere 210.0
2429 Female, age 94, left hemisphere 193.7
2428 Male, age 75, right hemisphere 184.7
2242 Female, age 91, right hemisphere 171.1
2240 Male, age 76, both hemispheres 149.6
2535 Female, age 67, right hemisphere 137.8
Lateral amygdala
nTPM: 246.8
2534 Female, age 94, left hemisphere 304.6
2256 Male, age 80, left hemisphere 290.2
2516 Male, age 75, right hemisphere 265.6
1883 Male, age 76, both hemispheres 233.1
2255 Female, age 91, right hemisphere 212.6
2830 Female, age 67, right hemisphere 174.5
Stria terminalis, bed nucleus
nTPM: 224.2
1974 Female, age 91, both hemispheres 286.5
2486 Female, age 94, both hemispheres 214.4
2201 Male, age 74, unknown 171.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 171.3
Samples: 152

Max nTPM: 291.2
Min nTPM: 29.2
Std nTPM: 38.4
Median nTPM: 169.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 291.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 277.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 275.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 257.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 255.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 254.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 239.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 237.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 236.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 234.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 232.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 231.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 230.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 227.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 224.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 220.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 217.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 217.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 216.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 214.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 214.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 214.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 212.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 208.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 207.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 205.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 204.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 204.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 204.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 200.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 199.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 197.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 194.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 193.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 193.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 192.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 192.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 191.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 190.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 189.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 189.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 187.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 187.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 186.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 186.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 183.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 181.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 181.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 179.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 179.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 178.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 178.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 178.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 178.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 177.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 176.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 175.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 175.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 175.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 175.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 174.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 174.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 173.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 171.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 170.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 170.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 169.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 169.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 169.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 169.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 169.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 169.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 168.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 168.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 166.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 166.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 166.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 166.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 165.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 165.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 164.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 164.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 163.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 161.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 160.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 160.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 159.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 159.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 158.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 157.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 155.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 155.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 155.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 153.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 149.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 149.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 149.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 148.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 146.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 146.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 146.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 144.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 143.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 143.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 142.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 140.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 138.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 136.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 136.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 135.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 135.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 135.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 135.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 134.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 131.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 131.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 129.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 129.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 128.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 127.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 126.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 118.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 117.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 116.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 115.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 114.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 111.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 110.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 106.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 89.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 29.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1039.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1039.0
FF:10151-102I7 76 years, female 1039.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 368.4
Pig sample Sample description nTPM
Amygdala
nTPM: 368.4
Samples: 4

Max nTPM: 459.8
Min nTPM: 322.5
Sample A Female 459.8
Sample B Female 339.7
Sample C Male 351.5
Sample D Male 322.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.8
Samples: 4

Max nTPM: 62.0
Min nTPM: 48.5
Sample A Male 55.1
Sample B Male 48.5
Sample C Female 62.0
Sample D Female 53.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.6
74510104 Antisense, RP_060208_01_A08, Mouse strain C57BL/6J (56 days, male) 16.6

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