MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:296.0 nTPM
HPA:296.0 nTPM
GTEx:184.2 nTPM
FANTOM5:1159.5 Scaled Tags Per Million
Pig:581.2 nTPM
Mouse:60.5 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 296.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 282.4
1870 Female, age 42, unknown 344.3
2411 Female, age 72, unknown 330.9
2828 Female, age 72, unknown 313.8
2586 Male, age 75, left hemisphere 310.3
1830 Male, age 51, unknown 297.3
1833 Male, age 53, unknown 290.9
1827 Male, age 72, unknown 278.4
2019 Male, age 18, unknown 251.4
2666 Male, age 74, left hemisphere 213.1
2219 Male, age 76, both hemispheres 193.3
Dorsal raphe nucleus
nTPM: 230.5
2750 Male, age 76, both hemispheres 319.4
2047 Male, age 72, unknown 220.2
1828 Male, age 53, unknown 215.2
2298 Female, age 72, unknown 200.5
2016 Female, age 72, unknown 197.0
Inferior colliculus
nTPM: 190.8
1848 Female, age 42, unknown 215.7
2097 Female, age 72, unknown 197.8
2849 Male, age 72, unknown 195.8
1890 Male, age 53, unknown 153.6
Median raphe nucleus
nTPM: 246.6
2220 Male, age 76, midline 246.6
Pedunculopontine tegmental nucleus
nTPM: 230.7
2334 Male, age 80, both hemispheres 250.1
1921 Female, age 85, both hemispheres 222.7
2338 Male, age 61, both hemispheres 219.4
Periaquaductal grey, anterior
nTPM: 274.0
2502 Female, age 75, unknown 305.7
1947 Male, age 18, unknown 293.1
1795 Male, age 51, unknown 223.3
Periaquaductal grey, dorsal
nTPM: 183.2
2464 Female, age 72, unknown 199.4
2850 Male, age 76, both hemispheres 197.8
1831 Male, age 72, unknown 169.6
1840 Male, age 53, unknown 166.0
Periaquaductal grey, lateral
nTPM: 239.4
2272 Male, age 74, both hemispheres 253.8
2053 Male, age 18, unknown 248.8
2140 Male, age 76, both hemispheres 215.6
Pretectal area
nTPM: 234.9
2273 Male, age 74, both hemispheres 276.0
2316 Male, age 76, right hemisphere 272.2
2407 Male, age 75, both hemispheres 268.5
2825 Male, age 18, unknown 246.1
1815 Male, age 53, unknown 243.2
2667 Female, age 75, unknown 239.5
1817 Female, age 42, unknown 219.3
2007 Male, age 72, unknown 213.1
2224 Female, age 72, unknown 209.1
1816 Male, age 51, unknown 201.8
1944 Female, age 72, unknown 195.3
Red nucleus
nTPM: 296.0
1865 Male, age 51, unknown 345.3
1821 Female, age 72, unknown 334.6
2503 Female, age 72, unknown 330.8
1904 Male, age 53, unknown 322.6
2227 Male, age 72, unknown 317.6
2725 Female, age 75, unknown 316.3
2769 Male, age 72, unknown 314.5
1954 Female, age 42, unknown 296.8
2785 Male, age 18, unknown 283.9
2823 Male, age 76, right hemisphere 253.6
2588 Male, age 74, left hemisphere 240.1
2584 Male, age 75, left hemisphere 195.5
Substantia nigra
nTPM: 233.5
1916 Female, age 42, unknown 316.6
1851 Male, age 51, unknown 300.8
1941 Male, age 53, unknown 291.1
1889 Female, age 72, unknown 235.2
2590 Female, age 75, unknown 233.8
2699 Male, age 18, unknown 224.2
2241 Male, age 72, unknown 218.8
2409 Female, age 72, unknown 212.7
2583 Male, age 75, right hemisphere 196.8
2665 Male, age 74, both hemispheres 105.0
Superior colliculus
nTPM: 261.4
1913 Female, age 42, unknown 315.8
2664 Male, age 75, both hemispheres 309.6
2587 Male, age 74, left hemisphere 280.6
1995 Male, age 72, unknown 273.5
1796 Male, age 53, unknown 265.7
2261 Male, age 18, unknown 260.0
1839 Male, age 51, unknown 256.6
1895 Male, age 76, right hemisphere 248.0
2087 Female, age 72, unknown 202.8
2668 Female, age 75, unknown 201.8
Ventral tegmental area
nTPM: 267.3
2410 Female, age 72, unknown 316.3
2223 Female, age 72, unknown 290.6
1915 Female, age 42, unknown 273.0
2218 Male, age 76, both hemispheres 265.3
2021 Male, age 53, unknown 233.9
1942 Male, age 51, unknown 224.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 184.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.2
Samples: 139

Max nTPM: 364.6
Min nTPM: 90.6
Std nTPM: 49.0
Median nTPM: 175.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 364.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 364.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 332.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 297.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 295.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 286.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 278.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 277.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 277.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 264.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 261.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1159.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1159.5
FF:10158-103A5 76 years, female 1159.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 581.2
Pig sample Sample description nTPM
Midbrain
nTPM: 581.2
Samples: 4

Max nTPM: 852.9
Min nTPM: 451.2
Sample A Female 852.9
Sample B Female 506.4
Sample C Male 514.1
Sample D Male 451.2
Periaqueductal gray
nTPM: 446.6
Samples: 3

Max nTPM: 465.9
Min nTPM: 416.7
Sample B Female 457.3
Sample C Male 465.9
Sample D Male 416.7
Substantia nigra
nTPM: 571.4
Samples: 4

Max nTPM: 654.6
Min nTPM: 382.6
Sample A Female 654.6
Sample B Female 382.6
Sample C Male 600.5
Sample D Male 647.9
Superior colliculi
nTPM: 487.5
Samples: 4

Max nTPM: 574.9
Min nTPM: 278.1
Sample A Female 536.8
Sample B Female 278.1
Sample C Male 560.3
Sample D Male 574.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 62.7
Min nTPM: 58.0
Sample A Male 58.0
Sample B Male 60.4
Sample C Female 62.7
Sample D Female 60.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
74510104 Antisense, RP_060208_01_A08, Mouse strain C57BL/6J (56 days, male) 15.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.