MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:738.2 nTPM
HPA:738.2 nTPM
GTEx:593.2 nTPM
FANTOM5:1970.0 Scaled Tags Per Million
Pig:447.2 nTPM
Mouse:1161.0 nTPM
Allen mouse:23.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 738.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 631.9
2411 Female, age 72, unknown 691.9
2666 Male, age 74, left hemisphere 684.9
1827 Male, age 72, unknown 684.0
2219 Male, age 76, both hemispheres 656.5
1870 Female, age 42, unknown 621.6
2019 Male, age 18, unknown 617.1
1833 Male, age 53, unknown 612.7
2828 Female, age 72, unknown 606.1
1830 Male, age 51, unknown 583.4
2586 Male, age 75, left hemisphere 561.2
Dorsal raphe nucleus
nTPM: 680.0
2298 Female, age 72, unknown 755.5
2047 Male, age 72, unknown 727.5
1828 Male, age 53, unknown 671.5
2750 Male, age 76, both hemispheres 652.2
2016 Female, age 72, unknown 593.4
Inferior colliculus
nTPM: 606.9
2097 Female, age 72, unknown 634.1
2849 Male, age 72, unknown 601.0
1848 Female, age 42, unknown 599.1
1890 Male, age 53, unknown 593.5
Median raphe nucleus
nTPM: 738.2
2220 Male, age 76, midline 738.2
Pedunculopontine tegmental nucleus
nTPM: 658.7
2334 Male, age 80, both hemispheres 676.9
1921 Female, age 85, both hemispheres 669.6
2338 Male, age 61, both hemispheres 629.6
Periaquaductal grey, anterior
nTPM: 664.6
1947 Male, age 18, unknown 711.7
1795 Male, age 51, unknown 650.9
2502 Female, age 75, unknown 631.2
Periaquaductal grey, dorsal
nTPM: 618.0
1840 Male, age 53, unknown 642.8
2850 Male, age 76, both hemispheres 629.3
2464 Female, age 72, unknown 604.5
1831 Male, age 72, unknown 595.4
Periaquaductal grey, lateral
nTPM: 608.9
2272 Male, age 74, both hemispheres 633.3
2053 Male, age 18, unknown 604.0
2140 Male, age 76, both hemispheres 589.3
Pretectal area
nTPM: 657.1
1816 Male, age 51, unknown 745.5
1944 Female, age 72, unknown 701.6
2007 Male, age 72, unknown 692.5
1817 Female, age 42, unknown 688.4
2224 Female, age 72, unknown 674.0
2667 Female, age 75, unknown 664.0
1815 Male, age 53, unknown 662.5
2825 Male, age 18, unknown 629.1
2273 Male, age 74, both hemispheres 609.6
2407 Male, age 75, both hemispheres 598.6
2316 Male, age 76, right hemisphere 562.1
Red nucleus
nTPM: 617.7
1821 Female, age 72, unknown 694.9
2725 Female, age 75, unknown 676.2
2588 Male, age 74, left hemisphere 633.2
2503 Female, age 72, unknown 628.6
1954 Female, age 42, unknown 612.4
2584 Male, age 75, left hemisphere 611.3
1904 Male, age 53, unknown 602.7
1865 Male, age 51, unknown 598.4
2785 Male, age 18, unknown 596.9
2227 Male, age 72, unknown 590.5
2769 Male, age 72, unknown 588.5
2823 Male, age 76, right hemisphere 578.8
Substantia nigra
nTPM: 730.2
1916 Female, age 42, unknown 878.7
1851 Male, age 51, unknown 793.1
2241 Male, age 72, unknown 782.3
1941 Male, age 53, unknown 771.5
1889 Female, age 72, unknown 713.8
2409 Female, age 72, unknown 702.0
2699 Male, age 18, unknown 701.7
2665 Male, age 74, both hemispheres 690.0
2590 Female, age 75, unknown 651.5
2583 Male, age 75, right hemisphere 617.3
Superior colliculus
nTPM: 611.9
2087 Female, age 72, unknown 655.8
1796 Male, age 53, unknown 651.0
2261 Male, age 18, unknown 645.0
2587 Male, age 74, left hemisphere 642.1
2668 Female, age 75, unknown 631.3
1839 Male, age 51, unknown 606.8
1895 Male, age 76, right hemisphere 601.4
2664 Male, age 75, both hemispheres 573.5
1913 Female, age 42, unknown 568.3
1995 Male, age 72, unknown 543.6
Ventral tegmental area
nTPM: 698.1
2410 Female, age 72, unknown 783.5
1915 Female, age 42, unknown 756.8
2218 Male, age 76, both hemispheres 726.9
2223 Female, age 72, unknown 650.6
1942 Male, age 51, unknown 645.8
2021 Male, age 53, unknown 625.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 593.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 593.2
Samples: 139

Max nTPM: 2116.0
Min nTPM: 253.1
Std nTPM: 278.9
Median nTPM: 508.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2116.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1930.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1321.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1238.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1216.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1205.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1166.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1143.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1036.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1028.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1022.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1970.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1970.0
FF:10158-103A5 76 years, female 1970.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 447.2
Pig sample Sample description nTPM
Midbrain
nTPM: 434.2
Samples: 4

Max nTPM: 536.2
Min nTPM: 390.0
Sample A Female 404.4
Sample B Female 390.0
Sample C Male 536.2
Sample D Male 406.1
Periaqueductal gray
nTPM: 362.2
Samples: 3

Max nTPM: 443.7
Min nTPM: 300.9
Sample B Female 342.1
Sample C Male 443.7
Sample D Male 300.9
Substantia nigra
nTPM: 447.2
Samples: 4

Max nTPM: 590.1
Min nTPM: 270.2
Sample A Female 582.3
Sample B Female 346.1
Sample C Male 590.1
Sample D Male 270.2
Superior colliculi
nTPM: 413.5
Samples: 4

Max nTPM: 489.4
Min nTPM: 291.1
Sample A Female 465.0
Sample B Female 291.1
Sample C Male 489.4
Sample D Male 408.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1161.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1161.0
Samples: 4

Max nTPM: 1206.3
Min nTPM: 1098.2
Sample A Male 1098.2
Sample B Male 1166.0
Sample C Female 1206.3
Sample D Female 1173.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.0
69735168 Antisense, RP_050503_02_C01, Mouse strain C57BL/6J (56 days, male) 23.0

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The Human Protein Atlas project is funded
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